Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 486 | 0.66 | 0.712535 |
Target: 5'- cGCAGCAAcAgCGGG-CGgcGCGGCGc -3' miRNA: 3'- -UGUCGUUaUgGUCUgGCuuCGCCGCu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 2555 | 0.7 | 0.476118 |
Target: 5'- gGCGGCuacugcuuccGCCGcauGGCCGuGAGCGGCGAg -3' miRNA: 3'- -UGUCGuua-------UGGU---CUGGC-UUCGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 3004 | 0.69 | 0.543134 |
Target: 5'- cGCGGCGGUGCCGcGGCgcuugCGcagcuuGGCGGCGGc -3' miRNA: 3'- -UGUCGUUAUGGU-CUG-----GCu-----UCGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 4182 | 0.68 | 0.587984 |
Target: 5'- aGCGGCGAcaugACCGcGACCGAAGUGcuGCa- -3' miRNA: 3'- -UGUCGUUa---UGGU-CUGGCUUCGC--CGcu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 4660 | 0.7 | 0.478219 |
Target: 5'- uCAGCGAcGCgCAGACCGcugcgcAGaCGGCGAg -3' miRNA: 3'- uGUCGUUaUG-GUCUGGCu-----UC-GCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 5394 | 0.73 | 0.303111 |
Target: 5'- cCAGCGcgACCGGugaACCGGcgGGCGGCGc -3' miRNA: 3'- uGUCGUuaUGGUC---UGGCU--UCGCCGCu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 5508 | 0.71 | 0.421268 |
Target: 5'- gGCAGgAGUGCCAGcgggcgcguggucgcGCCGGucgcuGCGGCGc -3' miRNA: 3'- -UGUCgUUAUGGUC---------------UGGCUu----CGCCGCu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 6354 | 0.67 | 0.643714 |
Target: 5'- -gGGCAG-ACCGGugCGAAccgacguGCGGUGGc -3' miRNA: 3'- ugUCGUUaUGGUCugGCUU-------CGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 7344 | 0.69 | 0.521122 |
Target: 5'- cACAGCGGgcgGCCgGGGCCGAugucGCGGUc- -3' miRNA: 3'- -UGUCGUUa--UGG-UCUGGCUu---CGCCGcu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 7477 | 0.67 | 0.656233 |
Target: 5'- gGCGGCG--GCgGGugCGAccGUGGCGAu -3' miRNA: 3'- -UGUCGUuaUGgUCugGCUu-CGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 7602 | 0.7 | 0.467763 |
Target: 5'- -aAGCGGcGCCGguuGAUCGAugGGCGGCGAc -3' miRNA: 3'- ugUCGUUaUGGU---CUGGCU--UCGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 8178 | 0.68 | 0.554256 |
Target: 5'- aACAGCGGcGCCucGgCGAGcGCGGCGAg -3' miRNA: 3'- -UGUCGUUaUGGucUgGCUU-CGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 10739 | 0.7 | 0.478219 |
Target: 5'- gAUGGCGAcauggaAUCGGACUGgcGCGGCGGg -3' miRNA: 3'- -UGUCGUUa-----UGGUCUGGCuuCGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 11384 | 0.66 | 0.678909 |
Target: 5'- uCAGCGcaGCCGGAgCGcuGGCGGCc- -3' miRNA: 3'- uGUCGUuaUGGUCUgGCu-UCGCCGcu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 11398 | 0.66 | 0.723591 |
Target: 5'- uCAGC-GUACCGG-CCGucGCGGUu- -3' miRNA: 3'- uGUCGuUAUGGUCuGGCuuCGCCGcu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 12282 | 0.74 | 0.28708 |
Target: 5'- uGCAGCaAAUGCCGGAUggcaaugCGAAGCGGUu- -3' miRNA: 3'- -UGUCG-UUAUGGUCUG-------GCUUCGCCGcu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 12966 | 0.99 | 0.004713 |
Target: 5'- uACAGCAAU-CCAGACCGAAGCGGCGAc -3' miRNA: 3'- -UGUCGUUAuGGUCUGGCUUCGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 12994 | 0.7 | 0.467763 |
Target: 5'- cGCGGCAccgacCCGGACC-AGGCGGCu- -3' miRNA: 3'- -UGUCGUuau--GGUCUGGcUUCGCCGcu -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 13372 | 0.72 | 0.352661 |
Target: 5'- cCGGCGAUGgCgcucgcgcugaAGGCCGgcGCGGCGGa -3' miRNA: 3'- uGUCGUUAUgG-----------UCUGGCuuCGCCGCU- -5' |
|||||||
28130 | 5' | -53.9 | NC_005887.1 | + | 14107 | 0.66 | 0.712535 |
Target: 5'- aACGGCAucGUcUCAGGCUGcgccGGCGGCGc -3' miRNA: 3'- -UGUCGU--UAuGGUCUGGCu---UCGCCGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home