miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28130 5' -53.9 NC_005887.1 + 33367 0.68 0.587984
Target:  5'- uGCAGCGgauGUGCaCGcGCCGgcGCGGCa- -3'
miRNA:   3'- -UGUCGU---UAUG-GUcUGGCuuCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 25491 0.69 0.499466
Target:  5'- cGCAGCGGcgGCuCGGACgaUGgcGCGGCGGg -3'
miRNA:   3'- -UGUCGUUa-UG-GUCUG--GCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 37078 0.69 0.521122
Target:  5'- gACGGCGu--UCGcACCGAAGCgGGCGAg -3'
miRNA:   3'- -UGUCGUuauGGUcUGGCUUCG-CCGCU- -5'
28130 5' -53.9 NC_005887.1 + 21067 0.69 0.543134
Target:  5'- uCGGC---GCCGGugUGggGUGGCGu -3'
miRNA:   3'- uGUCGuuaUGGUCugGCuuCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 32427 0.68 0.554256
Target:  5'- gGCGGCGAUGu--GGCCG--GCGGCGAu -3'
miRNA:   3'- -UGUCGUUAUgguCUGGCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 23210 0.68 0.563201
Target:  5'- gGCGGCuacuucaaggGCCAcGCCGAcggcacgcgAGCGGCGGc -3'
miRNA:   3'- -UGUCGuua-------UGGUcUGGCU---------UCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 37469 0.68 0.565444
Target:  5'- uGCAGUgc-GCCGGAUgCGAucagGGCGGCGGu -3'
miRNA:   3'- -UGUCGuuaUGGUCUG-GCU----UCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 17252 0.68 0.565444
Target:  5'- gGCGGCGucaauaagaucGUGCCGGGCgaGAcgucgGGCGGCGc -3'
miRNA:   3'- -UGUCGU-----------UAUGGUCUGg-CU-----UCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 27725 0.68 0.586853
Target:  5'- gACGGCGGUcagGCCguaguagAGACgGAAGUGGcCGAu -3'
miRNA:   3'- -UGUCGUUA---UGG-------UCUGgCUUCGCC-GCU- -5'
28130 5' -53.9 NC_005887.1 + 30452 0.69 0.488788
Target:  5'- -gGGCAuguUGCCGGGCUGGaacaGGCGGUGc -3'
miRNA:   3'- ugUCGUu--AUGGUCUGGCU----UCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 10739 0.7 0.478219
Target:  5'- gAUGGCGAcauggaAUCGGACUGgcGCGGCGGg -3'
miRNA:   3'- -UGUCGUUa-----UGGUCUGGCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 4660 0.7 0.478219
Target:  5'- uCAGCGAcGCgCAGACCGcugcgcAGaCGGCGAg -3'
miRNA:   3'- uGUCGUUaUG-GUCUGGCu-----UC-GCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 14704 0.76 0.208688
Target:  5'- cGCGGCGGg--CGGGCCGGGcGCGGCGAu -3'
miRNA:   3'- -UGUCGUUaugGUCUGGCUU-CGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 12282 0.74 0.28708
Target:  5'- uGCAGCaAAUGCCGGAUggcaaugCGAAGCGGUu- -3'
miRNA:   3'- -UGUCG-UUAUGGUCUG-------GCUUCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 5394 0.73 0.303111
Target:  5'- cCAGCGcgACCGGugaACCGGcgGGCGGCGc -3'
miRNA:   3'- uGUCGUuaUGGUC---UGGCU--UCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 13372 0.72 0.352661
Target:  5'- cCGGCGAUGgCgcucgcgcugaAGGCCGgcGCGGCGGa -3'
miRNA:   3'- uGUCGUUAUgG-----------UCUGGCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 38138 0.71 0.416383
Target:  5'- cGCGGCGAUgaaaaugccggacAUCAGGCCGAgcgcgaaauaGGCGGUGu -3'
miRNA:   3'- -UGUCGUUA-------------UGGUCUGGCU----------UCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 7602 0.7 0.467763
Target:  5'- -aAGCGGcGCCGguuGAUCGAugGGCGGCGAc -3'
miRNA:   3'- ugUCGUUaUGGU---CUGGCU--UCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 12994 0.7 0.467763
Target:  5'- cGCGGCAccgacCCGGACC-AGGCGGCu- -3'
miRNA:   3'- -UGUCGUuau--GGUCUGGcUUCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 2555 0.7 0.476118
Target:  5'- gGCGGCuacugcuuccGCCGcauGGCCGuGAGCGGCGAg -3'
miRNA:   3'- -UGUCGuua-------UGGU---CUGGC-UUCGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.