miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 16159 0.71 0.429527
Target:  5'- gCGCGCCGagugCGCGA--GCGAUCGa -3'
miRNA:   3'- -GCGCGGUgcuaGCGCUuaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 16582 0.66 0.72875
Target:  5'- gGCGCCgGCG---GCGAc-GCGAUCGGc -3'
miRNA:   3'- gCGCGG-UGCuagCGCUuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 16919 0.76 0.220305
Target:  5'- cCGCGCCGCGGuacaccUCGCGGAUGauGUCGc -3'
miRNA:   3'- -GCGCGGUGCU------AGCGCUUACgcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 17255 0.68 0.619149
Target:  5'- gGCGUCAauaaGAUCGUGccggGCGAgacgUCGGg -3'
miRNA:   3'- gCGCGGUg---CUAGCGCuua-CGCU----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 17291 0.66 0.72875
Target:  5'- gGCGCCGCGcgCGCaAAcGcCGGuUCGGc -3'
miRNA:   3'- gCGCGGUGCuaGCGcUUaC-GCU-AGCC- -5'
28131 5' -54.5 NC_005887.1 + 17922 0.66 0.749861
Target:  5'- gGC-CCACGucGUCGCGAG-GUuGUCGGu -3'
miRNA:   3'- gCGcGGUGC--UAGCGCUUaCGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 18036 0.66 0.749861
Target:  5'- gCGCGCCggacugACGGcCGaCGAuuggGCGAUCGu -3'
miRNA:   3'- -GCGCGG------UGCUaGC-GCUua--CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 18380 0.66 0.72875
Target:  5'- gCGCGCCgGCGcUCGCGAAccCGAU-GGc -3'
miRNA:   3'- -GCGCGG-UGCuAGCGCUUacGCUAgCC- -5'
28131 5' -54.5 NC_005887.1 + 18464 0.66 0.722336
Target:  5'- gGCGCCGCGGcguaggccaucggguUCGCGA--GCGc-CGGc -3'
miRNA:   3'- gCGCGGUGCU---------------AGCGCUuaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 19186 0.67 0.652383
Target:  5'- aGCGgCGCGggCGUGGAgacagGCGGcgCGGu -3'
miRNA:   3'- gCGCgGUGCuaGCGCUUa----CGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 22241 0.71 0.439237
Target:  5'- uCGCGUgguuCACGAUCaGCGAcgguggcgcgcAgcagGCGAUCGGa -3'
miRNA:   3'- -GCGCG----GUGCUAG-CGCU-----------Ua---CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 22315 0.7 0.488531
Target:  5'- gCGCGCCACcgucgcuGAUCGUGAAccacGCGAcgaucagCGGg -3'
miRNA:   3'- -GCGCGGUG-------CUAGCGCUUa---CGCUa------GCC- -5'
28131 5' -54.5 NC_005887.1 + 22620 0.66 0.73936
Target:  5'- aGCGUCucgggcauguCGAUCGCGGAcggcaUGCGcagCGGc -3'
miRNA:   3'- gCGCGGu---------GCUAGCGCUU-----ACGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 22950 0.66 0.718042
Target:  5'- uGCGCCACcaGcgCGCGAGgaucugauaGCGGcCGGc -3'
miRNA:   3'- gCGCGGUG--CuaGCGCUUa--------CGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 23037 0.7 0.469093
Target:  5'- aCGCGCCAUGcUCGCGcagcugccgcaGA-GCGuAUCGGu -3'
miRNA:   3'- -GCGCGGUGCuAGCGC-----------UUaCGC-UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 23187 0.66 0.73936
Target:  5'- uCGCGCuCGCGAUCaCGGccGgGggCGGc -3'
miRNA:   3'- -GCGCG-GUGCUAGcGCUuaCgCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 23223 0.7 0.499955
Target:  5'- aGgGCCACGccgacggcaCGCGAGcggcgGCGGUCGGc -3'
miRNA:   3'- gCgCGGUGCua-------GCGCUUa----CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 23250 0.67 0.663437
Target:  5'- cCG-GCCGUGAUCGCGAGcGCGA-CGa -3'
miRNA:   3'- -GCgCGGUGCUAGCGCUUaCGCUaGCc -5'
28131 5' -54.5 NC_005887.1 + 24260 0.66 0.707247
Target:  5'- aGCaGCCACGGcgagUCGcCGGAUagcGCGAUCa- -3'
miRNA:   3'- gCG-CGGUGCU----AGC-GCUUA---CGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 24916 0.73 0.318873
Target:  5'- aGCaGCCGgaucggcaccguuguCGAUCGCGAcgcGUGCGcgCGGg -3'
miRNA:   3'- gCG-CGGU---------------GCUAGCGCU---UACGCuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.