miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 11562 0.75 0.271429
Target:  5'- gCGCGCgGCGGUCGCGGA----AUCGGg -3'
miRNA:   3'- -GCGCGgUGCUAGCGCUUacgcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 11783 0.69 0.531683
Target:  5'- gCGCGCCguGCGcgCgGCGAA-GCGAUCu- -3'
miRNA:   3'- -GCGCGG--UGCuaG-CGCUUaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 12106 0.68 0.629121
Target:  5'- gGCGCCuguguugucuucgACGGUUGCGAgcggcGUGCGugcgcCGGa -3'
miRNA:   3'- gCGCGG-------------UGCUAGCGCU-----UACGCua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 12433 0.68 0.608081
Target:  5'- gGCGCgCGCGAUCGCGAuggaccCGAgccuguaCGGu -3'
miRNA:   3'- gCGCG-GUGCUAGCGCUuac---GCUa------GCC- -5'
28131 5' -54.5 NC_005887.1 + 12710 0.68 0.586017
Target:  5'- gCGCGCaCGCuGGUCGCGcagcagcagAAUGCGcUCGa -3'
miRNA:   3'- -GCGCG-GUG-CUAGCGC---------UUACGCuAGCc -5'
28131 5' -54.5 NC_005887.1 + 13089 0.67 0.674462
Target:  5'- gGCGCU-CGAUCGCGgAGUGCugcaGGg -3'
miRNA:   3'- gCGCGGuGCUAGCGC-UUACGcuagCC- -5'
28131 5' -54.5 NC_005887.1 + 13166 0.68 0.630229
Target:  5'- cCGCGCgCGCGcagacaGCGGGaGCGGUCGa -3'
miRNA:   3'- -GCGCG-GUGCuag---CGCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 13334 0.67 0.685446
Target:  5'- uGCGCCuuuguguCGAUCGgcaacgaauCGAcgGCGGUCa- -3'
miRNA:   3'- gCGCGGu------GCUAGC---------GCUuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 13397 0.71 0.410494
Target:  5'- uGCGCgGCGAgaucCGCGA-UGCGGcCGGc -3'
miRNA:   3'- gCGCGgUGCUa---GCGCUuACGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 13530 1.1 0.000945
Target:  5'- gCGCGCCACGAUCGCGAAUGCGAUCGGc -3'
miRNA:   3'- -GCGCGGUGCUAGCGCUUACGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 13728 0.77 0.197964
Target:  5'- uCGCGCCGCuGAUCGCGuucUGCacGUCGGu -3'
miRNA:   3'- -GCGCGGUG-CUAGCGCuu-ACGc-UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14079 0.81 0.110577
Target:  5'- gCGCGCCgGCGGUUGCGGAgGCGcgCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGCUUaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 14343 0.68 0.575039
Target:  5'- -aCGCgGCGAUCGUGAAgcaGCGugcCGGg -3'
miRNA:   3'- gcGCGgUGCUAGCGCUUa--CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 14519 0.71 0.443155
Target:  5'- aCGaCGCCuugcacggucugguCGAUCGCGGuUGCGcgcGUCGGg -3'
miRNA:   3'- -GC-GCGGu-------------GCUAGCGCUuACGC---UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14720 0.75 0.251217
Target:  5'- gGCGCgGCGAUCGCGcagGCGAcgaUCGa -3'
miRNA:   3'- gCGCGgUGCUAGCGCuuaCGCU---AGCc -5'
28131 5' -54.5 NC_005887.1 + 14876 0.66 0.749861
Target:  5'- aGCGUCGCGGcCGCcAGauUGAUCGGg -3'
miRNA:   3'- gCGCGGUGCUaGCGcUUacGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14985 0.71 0.44907
Target:  5'- gCGUGCguCGAUCGCGAGUGauugcagCGGc -3'
miRNA:   3'- -GCGCGguGCUAGCGCUUACgcua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 15386 0.67 0.685446
Target:  5'- uCGaCGCCGCgcuGAUCGCGc--GCGGgcagCGGa -3'
miRNA:   3'- -GC-GCGGUG---CUAGCGCuuaCGCUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 15654 0.68 0.582719
Target:  5'- uGCGCUgcgucucagcuucgGCGAUCaGCGAAUcgagcGCGGUCGc -3'
miRNA:   3'- gCGCGG--------------UGCUAG-CGCUUA-----CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 16047 0.7 0.499955
Target:  5'- gCGCGCgCACGAcauccUCGaCGAAcUGCGAcagCGGc -3'
miRNA:   3'- -GCGCG-GUGCU-----AGC-GCUU-ACGCUa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.