miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 797 0.7 0.493709
Target:  5'- aGCGCgagcuCGCGAUCGCGAucaacagccaugcucGcGCGAUCGcGg -3'
miRNA:   3'- gCGCG-----GUGCUAGCGCU---------------UaCGCUAGC-C- -5'
28131 5' -54.5 NC_005887.1 + 891 0.76 0.212818
Target:  5'- uCGCgGCCGCGAUCGCGcgagcauggcuguuGAUcGCGAUCGc -3'
miRNA:   3'- -GCG-CGGUGCUAGCGC--------------UUA-CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 919 0.75 0.26455
Target:  5'- cCGCGUCGCGAcccgcaUCGCGAGUGCcccGAgugcuUCGGc -3'
miRNA:   3'- -GCGCGGUGCU------AGCGCUUACG---CU-----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 1935 0.76 0.226217
Target:  5'- gGCGUCAUG--CGUGAcgGCGAUCGGu -3'
miRNA:   3'- gCGCGGUGCuaGCGCUuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 2312 0.66 0.746723
Target:  5'- gCGCGcCCAUGcucGUCGCGAcgacuuccgaccggAUGCGccagccgcccAUCGGu -3'
miRNA:   3'- -GCGC-GGUGC---UAGCGCU--------------UACGC----------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 3783 0.67 0.674462
Target:  5'- uGCGCg--GAUCGCGGucgGCGcgCGGc -3'
miRNA:   3'- gCGCGgugCUAGCGCUua-CGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 3891 0.71 0.44907
Target:  5'- aGCGCC-CGAUUGCGAacgggaagGUGCGAa--- -3'
miRNA:   3'- gCGCGGuGCUAGCGCU--------UACGCUagcc -5'
28131 5' -54.5 NC_005887.1 + 4406 0.69 0.521021
Target:  5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3'
miRNA:   3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 5830 0.68 0.597034
Target:  5'- gGCGCg--GGUCGCGAAggGCGAagCGGa -3'
miRNA:   3'- gCGCGgugCUAGCGCUUa-CGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 6824 0.66 0.716966
Target:  5'- gGCGCUACGuggCGCGggUcugcaacaucgacGUG-UCGGa -3'
miRNA:   3'- gCGCGGUGCua-GCGCuuA-------------CGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 6881 0.66 0.707247
Target:  5'- cCGCGCCACGuagcgccaGUCGCGca-GCGugaGGc -3'
miRNA:   3'- -GCGCGGUGC--------UAGCGCuuaCGCuagCC- -5'
28131 5' -54.5 NC_005887.1 + 8299 0.68 0.608081
Target:  5'- gCGCGUCAcCGAUC-CGAAcGCGAU-GGa -3'
miRNA:   3'- -GCGCGGU-GCUAGcGCUUaCGCUAgCC- -5'
28131 5' -54.5 NC_005887.1 + 8519 0.68 0.608081
Target:  5'- uGCGCCGggcgcuCGAUCGCGuugacGCGGaucgcUCGGc -3'
miRNA:   3'- gCGCGGU------GCUAGCGCuua--CGCU-----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 8932 0.66 0.72875
Target:  5'- gGCGUCGCGAUCuCGAcggGCGcgcCGGc -3'
miRNA:   3'- gCGCGGUGCUAGcGCUua-CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 8996 0.68 0.630229
Target:  5'- gGCGCUcuGCGucgCGCGGAUcGCGAacguuccguccUCGGu -3'
miRNA:   3'- gCGCGG--UGCua-GCGCUUA-CGCU-----------AGCC- -5'
28131 5' -54.5 NC_005887.1 + 9248 0.78 0.172838
Target:  5'- cCGCGUCgGCGAUCGCGucuaucugugcAcgGCGGUCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGC-----------UuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 10088 0.73 0.331668
Target:  5'- uCGUGCCagcGCGGccgCGCGuGAUGUGGUCGGc -3'
miRNA:   3'- -GCGCGG---UGCUa--GCGC-UUACGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 10421 0.69 0.542423
Target:  5'- gGCGUUACGGUCGCG-GUGCuGAccgaCGGc -3'
miRNA:   3'- gCGCGGUGCUAGCGCuUACG-CUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 10603 0.66 0.696378
Target:  5'- gCGCGUCACGAacaUCGCGAcacGCuucucgCGGa -3'
miRNA:   3'- -GCGCGGUGCU---AGCGCUua-CGcua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 11073 0.68 0.575039
Target:  5'- cCGCGCCgcugcucaaACGAUucCGCGug-GCGcAUCGGc -3'
miRNA:   3'- -GCGCGG---------UGCUA--GCGCuuaCGC-UAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.