miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 13530 1.1 0.000945
Target:  5'- gCGCGCCACGAUCGCGAAUGCGAUCGGc -3'
miRNA:   3'- -GCGCGGUGCUAGCGCUUACGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14079 0.81 0.110577
Target:  5'- gCGCGCCgGCGGUUGCGGAgGCGcgCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGCUUaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 29964 0.78 0.168167
Target:  5'- aGCGCCGCGAacaccgccgCGCGGAUGCuGUCGa -3'
miRNA:   3'- gCGCGGUGCUa--------GCGCUUACGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 9248 0.78 0.172838
Target:  5'- cCGCGUCgGCGAUCGCGucuaucugugcAcgGCGGUCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGC-----------UuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 13728 0.77 0.197964
Target:  5'- uCGCGCCGCuGAUCGCGuucUGCacGUCGGu -3'
miRNA:   3'- -GCGCGGUG-CUAGCGCuu-ACGc-UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 891 0.76 0.212818
Target:  5'- uCGCgGCCGCGAUCGCGcgagcauggcuguuGAUcGCGAUCGc -3'
miRNA:   3'- -GCG-CGGUGCUAGCGC--------------UUA-CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 16919 0.76 0.220305
Target:  5'- cCGCGCCGCGGuacaccUCGCGGAUGauGUCGc -3'
miRNA:   3'- -GCGCGGUGCU------AGCGCUUACgcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 1935 0.76 0.226217
Target:  5'- gGCGUCAUG--CGUGAcgGCGAUCGGu -3'
miRNA:   3'- gCGCGGUGCuaGCGCUuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14720 0.75 0.251217
Target:  5'- gGCGCgGCGAUCGCGcagGCGAcgaUCGa -3'
miRNA:   3'- gCGCGgUGCUAGCGCuuaCGCU---AGCc -5'
28131 5' -54.5 NC_005887.1 + 919 0.75 0.26455
Target:  5'- cCGCGUCGCGAcccgcaUCGCGAGUGCcccGAgugcuUCGGc -3'
miRNA:   3'- -GCGCGGUGCU------AGCGCUUACG---CU-----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 11562 0.75 0.271429
Target:  5'- gCGCGCgGCGGUCGCGGA----AUCGGg -3'
miRNA:   3'- -GCGCGgUGCUAGCGCUUacgcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 24916 0.73 0.318873
Target:  5'- aGCaGCCGgaucggcaccguuguCGAUCGCGAcgcGUGCGcgCGGg -3'
miRNA:   3'- gCG-CGGU---------------GCUAGCGCU---UACGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 31563 0.73 0.323627
Target:  5'- cCGCGCCGCGcgCGCG---GCaAUCGGu -3'
miRNA:   3'- -GCGCGGUGCuaGCGCuuaCGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 29712 0.73 0.323627
Target:  5'- uCGCGCCGCG--CGUGAGUGaCGA-CGGc -3'
miRNA:   3'- -GCGCGGUGCuaGCGCUUAC-GCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 10088 0.73 0.331668
Target:  5'- uCGUGCCagcGCGGccgCGCGuGAUGUGGUCGGc -3'
miRNA:   3'- -GCGCGG---UGCUa--GCGC-UUACGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 37401 0.73 0.360093
Target:  5'- gGCGCUgcGCGGUCGCGAcugccugcacgccagGUGCGGagUGGa -3'
miRNA:   3'- gCGCGG--UGCUAGCGCU---------------UACGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 40768 0.72 0.365282
Target:  5'- gCGCGCCGCGcgcCGcCGAGccgGCGGUCGa -3'
miRNA:   3'- -GCGCGGUGCua-GC-GCUUa--CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 41021 0.72 0.38295
Target:  5'- cCGCGCCgaaGCGGUCGaGcAUGCGcUCGGc -3'
miRNA:   3'- -GCGCGG---UGCUAGCgCuUACGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 28305 0.71 0.410494
Target:  5'- aGCGCCGC--UCGCGAAgcUGCGcgCGc -3'
miRNA:   3'- gCGCGGUGcuAGCGCUU--ACGCuaGCc -5'
28131 5' -54.5 NC_005887.1 + 13397 0.71 0.410494
Target:  5'- uGCGCgGCGAgaucCGCGA-UGCGGcCGGc -3'
miRNA:   3'- gCGCGgUGCUa---GCGCUuACGCUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.