miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 16159 0.71 0.429527
Target:  5'- gCGCGCCGagugCGCGA--GCGAUCGa -3'
miRNA:   3'- -GCGCGGUgcuaGCGCUuaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 22241 0.71 0.439237
Target:  5'- uCGCGUgguuCACGAUCaGCGAcgguggcgcgcAgcagGCGAUCGGa -3'
miRNA:   3'- -GCGCG----GUGCUAG-CGCU-----------Ua---CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14519 0.71 0.443155
Target:  5'- aCGaCGCCuugcacggucugguCGAUCGCGGuUGCGcgcGUCGGg -3'
miRNA:   3'- -GC-GCGGu-------------GCUAGCGCUuACGC---UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14985 0.71 0.44907
Target:  5'- gCGUGCguCGAUCGCGAGUGauugcagCGGc -3'
miRNA:   3'- -GCGCGguGCUAGCGCUUACgcua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 3891 0.71 0.44907
Target:  5'- aGCGCC-CGAUUGCGAacgggaagGUGCGAa--- -3'
miRNA:   3'- gCGCGGuGCUAGCGCU--------UACGCUagcc -5'
28131 5' -54.5 NC_005887.1 + 40814 0.71 0.44907
Target:  5'- gCGCGCCaacgGCGAUCGCcucGAcGCGggCGGc -3'
miRNA:   3'- -GCGCGG----UGCUAGCGc--UUaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 34699 0.71 0.459024
Target:  5'- gCGCGCCucguCGA-CGCGAAcgGCGAaUGGc -3'
miRNA:   3'- -GCGCGGu---GCUaGCGCUUa-CGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 33214 0.7 0.469093
Target:  5'- aCGCGCCGCacuggcacucGGUCGCGccGUGCuccuUCGGg -3'
miRNA:   3'- -GCGCGGUG----------CUAGCGCu-UACGcu--AGCC- -5'
28131 5' -54.5 NC_005887.1 + 23037 0.7 0.469093
Target:  5'- aCGCGCCAUGcUCGCGcagcugccgcaGA-GCGuAUCGGu -3'
miRNA:   3'- -GCGCGGUGCuAGCGC-----------UUaCGC-UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 24993 0.7 0.469093
Target:  5'- cCGCGUCGCGAUCGacaacGGUGcCGAUcCGGc -3'
miRNA:   3'- -GCGCGGUGCUAGCgc---UUAC-GCUA-GCC- -5'
28131 5' -54.5 NC_005887.1 + 22315 0.7 0.488531
Target:  5'- gCGCGCCACcgucgcuGAUCGUGAAccacGCGAcgaucagCGGg -3'
miRNA:   3'- -GCGCGGUG-------CUAGCGCUUa---CGCUa------GCC- -5'
28131 5' -54.5 NC_005887.1 + 41902 0.7 0.488531
Target:  5'- gGCGCCGCcaGAUCGCGug-GUcgucgcccuucacGAUCGGc -3'
miRNA:   3'- gCGCGGUG--CUAGCGCuuaCG-------------CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 797 0.7 0.493709
Target:  5'- aGCGCgagcuCGCGAUCGCGAucaacagccaugcucGcGCGAUCGcGg -3'
miRNA:   3'- gCGCG-----GUGCUAGCGCU---------------UaCGCUAGC-C- -5'
28131 5' -54.5 NC_005887.1 + 16047 0.7 0.499955
Target:  5'- gCGCGCgCACGAcauccUCGaCGAAcUGCGAcagCGGc -3'
miRNA:   3'- -GCGCG-GUGCU-----AGC-GCUU-ACGCUa--GCC- -5'
28131 5' -54.5 NC_005887.1 + 40079 0.7 0.499955
Target:  5'- cCGCGCCAUGAU-GCGcAccGCGAcguccugcaugUCGGg -3'
miRNA:   3'- -GCGCGGUGCUAgCGC-UuaCGCU-----------AGCC- -5'
28131 5' -54.5 NC_005887.1 + 23223 0.7 0.499955
Target:  5'- aGgGCCACGccgacggcaCGCGAGcggcgGCGGUCGGc -3'
miRNA:   3'- gCgCGGUGCua-------GCGCUUa----CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 30824 0.7 0.50939
Target:  5'- cCGCGCgCACGGUCGagcugacCGAcgGCGAagUCGc -3'
miRNA:   3'- -GCGCG-GUGCUAGC-------GCUuaCGCU--AGCc -5'
28131 5' -54.5 NC_005887.1 + 39398 0.69 0.521021
Target:  5'- gGCGCaaccgUGGUCGCGAccGCGuUCGGc -3'
miRNA:   3'- gCGCGgu---GCUAGCGCUuaCGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 4406 0.69 0.521021
Target:  5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3'
miRNA:   3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 11783 0.69 0.531683
Target:  5'- gCGCGCCguGCGcgCgGCGAA-GCGAUCu- -3'
miRNA:   3'- -GCGCGG--UGCuaG-CGCUUaCGCUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.