miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 27407 0.66 0.696378
Target:  5'- gCGCGCCGCug-CGCGug-GCGcaGUCGa -3'
miRNA:   3'- -GCGCGGUGcuaGCGCuuaCGC--UAGCc -5'
28131 5' -54.5 NC_005887.1 + 10603 0.66 0.696378
Target:  5'- gCGCGUCACGAacaUCGCGAcacGCuucucgCGGa -3'
miRNA:   3'- -GCGCGGUGCU---AGCGCUua-CGcua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 13334 0.67 0.685446
Target:  5'- uGCGCCuuuguguCGAUCGgcaacgaauCGAcgGCGGUCa- -3'
miRNA:   3'- gCGCGGu------GCUAGC---------GCUuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 35771 0.67 0.685446
Target:  5'- aCGCGCgGCuggugGAUCaCGAuguugAUGCGAUCGa -3'
miRNA:   3'- -GCGCGgUG-----CUAGcGCU-----UACGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 15386 0.67 0.685446
Target:  5'- uCGaCGCCGCgcuGAUCGCGc--GCGGgcagCGGa -3'
miRNA:   3'- -GC-GCGGUG---CUAGCGCuuaCGCUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 28376 0.67 0.674462
Target:  5'- aCGCGUCgACGGcuUCGCGGcUGuCGAUCa- -3'
miRNA:   3'- -GCGCGG-UGCU--AGCGCUuAC-GCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 34371 0.67 0.674462
Target:  5'- aGCGCCccGCGuAUCa-GAGUGCGGcCGGg -3'
miRNA:   3'- gCGCGG--UGC-UAGcgCUUACGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 13089 0.67 0.674462
Target:  5'- gGCGCU-CGAUCGCGgAGUGCugcaGGg -3'
miRNA:   3'- gCGCGGuGCUAGCGC-UUACGcuagCC- -5'
28131 5' -54.5 NC_005887.1 + 3783 0.67 0.674462
Target:  5'- uGCGCg--GAUCGCGGucgGCGcgCGGc -3'
miRNA:   3'- gCGCGgugCUAGCGCUua-CGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 31360 0.67 0.673361
Target:  5'- uGCGCCGaugcCGGUCGagcucgaCGAG-GCGAUCGa -3'
miRNA:   3'- gCGCGGU----GCUAGC-------GCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 39457 0.67 0.663437
Target:  5'- uCGCGaCCACGGUUGCGccgcCGGccUCGGu -3'
miRNA:   3'- -GCGC-GGUGCUAGCGCuuacGCU--AGCC- -5'
28131 5' -54.5 NC_005887.1 + 23250 0.67 0.663437
Target:  5'- cCG-GCCGUGAUCGCGAGcGCGA-CGa -3'
miRNA:   3'- -GCgCGGUGCUAGCGCUUaCGCUaGCc -5'
28131 5' -54.5 NC_005887.1 + 37450 0.67 0.662333
Target:  5'- gGCGCUugccugcGCGGUuugcagugCGcCGGAUGCGAUCaGGg -3'
miRNA:   3'- gCGCGG-------UGCUA--------GC-GCUUACGCUAG-CC- -5'
28131 5' -54.5 NC_005887.1 + 41726 0.67 0.652383
Target:  5'- aCGgGCgGCGAUC-CGAucccgGCGcgCGGg -3'
miRNA:   3'- -GCgCGgUGCUAGcGCUua---CGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 35834 0.67 0.652383
Target:  5'- uGCGCCGCGucggcguagaucAUCGCcugcgGAuUGCGcUCGGc -3'
miRNA:   3'- gCGCGGUGC------------UAGCG-----CUuACGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 19186 0.67 0.652383
Target:  5'- aGCGgCGCGggCGUGGAgacagGCGGcgCGGu -3'
miRNA:   3'- gCGCgGUGCuaGCGCUUa----CGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 27290 0.67 0.652383
Target:  5'- uGCGCCGCGAUgCGCccGUGUucucGAUCa- -3'
miRNA:   3'- gCGCGGUGCUA-GCGcuUACG----CUAGcc -5'
28131 5' -54.5 NC_005887.1 + 24968 0.68 0.630229
Target:  5'- uGCG-CGCGGcCGCGAggGacaGGUCGGg -3'
miRNA:   3'- gCGCgGUGCUaGCGCUuaCg--CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 8996 0.68 0.630229
Target:  5'- gGCGCUcuGCGucgCGCGGAUcGCGAacguuccguccUCGGu -3'
miRNA:   3'- gCGCGG--UGCua-GCGCUUA-CGCU-----------AGCC- -5'
28131 5' -54.5 NC_005887.1 + 13166 0.68 0.630229
Target:  5'- cCGCGCgCGCGcagacaGCGGGaGCGGUCGa -3'
miRNA:   3'- -GCGCG-GUGCuag---CGCUUaCGCUAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.