miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 24968 0.68 0.630229
Target:  5'- uGCG-CGCGGcCGCGAggGacaGGUCGGg -3'
miRNA:   3'- gCGCgGUGCUaGCGCUuaCg--CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 12106 0.68 0.629121
Target:  5'- gGCGCCuguguugucuucgACGGUUGCGAgcggcGUGCGugcgcCGGa -3'
miRNA:   3'- gCGCGG-------------UGCUAGCGCU-----UACGCua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 17255 0.68 0.619149
Target:  5'- gGCGUCAauaaGAUCGUGccggGCGAgacgUCGGg -3'
miRNA:   3'- gCGCGGUg---CUAGCGCuua-CGCU----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 33801 0.68 0.619149
Target:  5'- gCGCGgacCCACGGccaccaCGCGggUGUcaGGUCGGc -3'
miRNA:   3'- -GCGC---GGUGCUa-----GCGCuuACG--CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 12433 0.68 0.608081
Target:  5'- gGCGCgCGCGAUCGCGAuggaccCGAgccuguaCGGu -3'
miRNA:   3'- gCGCG-GUGCUAGCGCUuac---GCUa------GCC- -5'
28131 5' -54.5 NC_005887.1 + 8519 0.68 0.608081
Target:  5'- uGCGCCGggcgcuCGAUCGCGuugacGCGGaucgcUCGGc -3'
miRNA:   3'- gCGCGGU------GCUAGCGCuua--CGCU-----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 8299 0.68 0.608081
Target:  5'- gCGCGUCAcCGAUC-CGAAcGCGAU-GGa -3'
miRNA:   3'- -GCGCGGU-GCUAGcGCUUaCGCUAgCC- -5'
28131 5' -54.5 NC_005887.1 + 5830 0.68 0.597034
Target:  5'- gGCGCg--GGUCGCGAAggGCGAagCGGa -3'
miRNA:   3'- gCGCGgugCUAGCGCUUa-CGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 41385 0.68 0.586017
Target:  5'- gGCGUCACGAcCGUGA-UGCGGUguuccuugccCGGc -3'
miRNA:   3'- gCGCGGUGCUaGCGCUuACGCUA----------GCC- -5'
28131 5' -54.5 NC_005887.1 + 30729 0.68 0.586017
Target:  5'- uCGCGCUGCGuggccuUCGCGAcuucGCcGUCGGu -3'
miRNA:   3'- -GCGCGGUGCu-----AGCGCUua--CGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 12710 0.68 0.586017
Target:  5'- gCGCGCaCGCuGGUCGCGcagcagcagAAUGCGcUCGa -3'
miRNA:   3'- -GCGCG-GUG-CUAGCGC---------UUACGCuAGCc -5'
28131 5' -54.5 NC_005887.1 + 15654 0.68 0.582719
Target:  5'- uGCGCUgcgucucagcuucgGCGAUCaGCGAAUcgagcGCGGUCGc -3'
miRNA:   3'- gCGCGG--------------UGCUAG-CGCUUA-----CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 14343 0.68 0.575039
Target:  5'- -aCGCgGCGAUCGUGAAgcaGCGugcCGGg -3'
miRNA:   3'- gcGCGgUGCUAGCGCUUa--CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 11073 0.68 0.575039
Target:  5'- cCGCGCCgcugcucaaACGAUucCGCGug-GCGcAUCGGc -3'
miRNA:   3'- -GCGCGG---------UGCUA--GCGCuuaCGC-UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 40151 0.69 0.564109
Target:  5'- gCGCGCCGCGcUCGCcGcGUGUGAgcugCGc -3'
miRNA:   3'- -GCGCGGUGCuAGCG-CuUACGCUa---GCc -5'
28131 5' -54.5 NC_005887.1 + 28570 0.69 0.553234
Target:  5'- gCGuCGCCGCccgcugCGCGGAcGCGGUCGa -3'
miRNA:   3'- -GC-GCGGUGcua---GCGCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 42021 0.69 0.553234
Target:  5'- uGuCGCCGCGG-CGCGcGAUGCGuacaaggCGGa -3'
miRNA:   3'- gC-GCGGUGCUaGCGC-UUACGCua-----GCC- -5'
28131 5' -54.5 NC_005887.1 + 10421 0.69 0.542423
Target:  5'- gGCGUUACGGUCGCG-GUGCuGAccgaCGGc -3'
miRNA:   3'- gCGCGGUGCUAGCGCuUACG-CUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 11783 0.69 0.531683
Target:  5'- gCGCGCCguGCGcgCgGCGAA-GCGAUCu- -3'
miRNA:   3'- -GCGCGG--UGCuaG-CGCUUaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 4406 0.69 0.521021
Target:  5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3'
miRNA:   3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.