Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28131 | 5' | -54.5 | NC_005887.1 | + | 40151 | 0.69 | 0.564109 |
Target: 5'- gCGCGCCGCGcUCGCcGcGUGUGAgcugCGc -3' miRNA: 3'- -GCGCGGUGCuAGCG-CuUACGCUa---GCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 42021 | 0.69 | 0.553234 |
Target: 5'- uGuCGCCGCGG-CGCGcGAUGCGuacaaggCGGa -3' miRNA: 3'- gC-GCGGUGCUaGCGC-UUACGCua-----GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 37401 | 0.73 | 0.360093 |
Target: 5'- gGCGCUgcGCGGUCGCGAcugccugcacgccagGUGCGGagUGGa -3' miRNA: 3'- gCGCGG--UGCUAGCGCU---------------UACGCUa-GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 24916 | 0.73 | 0.318873 |
Target: 5'- aGCaGCCGgaucggcaccguuguCGAUCGCGAcgcGUGCGcgCGGg -3' miRNA: 3'- gCG-CGGU---------------GCUAGCGCU---UACGCuaGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 11562 | 0.75 | 0.271429 |
Target: 5'- gCGCGCgGCGGUCGCGGA----AUCGGg -3' miRNA: 3'- -GCGCGgUGCUAGCGCUUacgcUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 919 | 0.75 | 0.26455 |
Target: 5'- cCGCGUCGCGAcccgcaUCGCGAGUGCcccGAgugcuUCGGc -3' miRNA: 3'- -GCGCGGUGCU------AGCGCUUACG---CU-----AGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 14720 | 0.75 | 0.251217 |
Target: 5'- gGCGCgGCGAUCGCGcagGCGAcgaUCGa -3' miRNA: 3'- gCGCGgUGCUAGCGCuuaCGCU---AGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 1935 | 0.76 | 0.226217 |
Target: 5'- gGCGUCAUG--CGUGAcgGCGAUCGGu -3' miRNA: 3'- gCGCGGUGCuaGCGCUuaCGCUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 9248 | 0.78 | 0.172838 |
Target: 5'- cCGCGUCgGCGAUCGCGucuaucugugcAcgGCGGUCGGc -3' miRNA: 3'- -GCGCGG-UGCUAGCGC-----------UuaCGCUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 29964 | 0.78 | 0.168167 |
Target: 5'- aGCGCCGCGAacaccgccgCGCGGAUGCuGUCGa -3' miRNA: 3'- gCGCGGUGCUa--------GCGCUUACGcUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 40768 | 0.72 | 0.365282 |
Target: 5'- gCGCGCCGCGcgcCGcCGAGccgGCGGUCGa -3' miRNA: 3'- -GCGCGGUGCua-GC-GCUUa--CGCUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 16159 | 0.71 | 0.429527 |
Target: 5'- gCGCGCCGagugCGCGA--GCGAUCGa -3' miRNA: 3'- -GCGCGGUgcuaGCGCUuaCGCUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 28570 | 0.69 | 0.553234 |
Target: 5'- gCGuCGCCGCccgcugCGCGGAcGCGGUCGa -3' miRNA: 3'- -GC-GCGGUGcua---GCGCUUaCGCUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 10421 | 0.69 | 0.542423 |
Target: 5'- gGCGUUACGGUCGCG-GUGCuGAccgaCGGc -3' miRNA: 3'- gCGCGGUGCUAGCGCuUACG-CUa---GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 4406 | 0.69 | 0.521021 |
Target: 5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3' miRNA: 3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 39398 | 0.69 | 0.521021 |
Target: 5'- gGCGCaaccgUGGUCGCGAccGCGuUCGGc -3' miRNA: 3'- gCGCGgu---GCUAGCGCUuaCGCuAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 23223 | 0.7 | 0.499955 |
Target: 5'- aGgGCCACGccgacggcaCGCGAGcggcgGCGGUCGGc -3' miRNA: 3'- gCgCGGUGCua-------GCGCUUa----CGCUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 797 | 0.7 | 0.493709 |
Target: 5'- aGCGCgagcuCGCGAUCGCGAucaacagccaugcucGcGCGAUCGcGg -3' miRNA: 3'- gCGCG-----GUGCUAGCGCU---------------UaCGCUAGC-C- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 33214 | 0.7 | 0.469093 |
Target: 5'- aCGCGCCGCacuggcacucGGUCGCGccGUGCuccuUCGGg -3' miRNA: 3'- -GCGCGGUG----------CUAGCGCu-UACGcu--AGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 22241 | 0.71 | 0.439237 |
Target: 5'- uCGCGUgguuCACGAUCaGCGAcgguggcgcgcAgcagGCGAUCGGa -3' miRNA: 3'- -GCGCG----GUGCUAG-CGCU-----------Ua---CGCUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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