miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 40151 0.69 0.564109
Target:  5'- gCGCGCCGCGcUCGCcGcGUGUGAgcugCGc -3'
miRNA:   3'- -GCGCGGUGCuAGCG-CuUACGCUa---GCc -5'
28131 5' -54.5 NC_005887.1 + 33214 0.7 0.469093
Target:  5'- aCGCGCCGCacuggcacucGGUCGCGccGUGCuccuUCGGg -3'
miRNA:   3'- -GCGCGGUG----------CUAGCGCu-UACGcu--AGCC- -5'
28131 5' -54.5 NC_005887.1 + 797 0.7 0.493709
Target:  5'- aGCGCgagcuCGCGAUCGCGAucaacagccaugcucGcGCGAUCGcGg -3'
miRNA:   3'- gCGCG-----GUGCUAGCGCU---------------UaCGCUAGC-C- -5'
28131 5' -54.5 NC_005887.1 + 23223 0.7 0.499955
Target:  5'- aGgGCCACGccgacggcaCGCGAGcggcgGCGGUCGGc -3'
miRNA:   3'- gCgCGGUGCua-------GCGCUUa----CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 39398 0.69 0.521021
Target:  5'- gGCGCaaccgUGGUCGCGAccGCGuUCGGc -3'
miRNA:   3'- gCGCGgu---GCUAGCGCUuaCGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 4406 0.69 0.521021
Target:  5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3'
miRNA:   3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 10421 0.69 0.542423
Target:  5'- gGCGUUACGGUCGCG-GUGCuGAccgaCGGc -3'
miRNA:   3'- gCGCGGUGCUAGCGCuUACG-CUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 28570 0.69 0.553234
Target:  5'- gCGuCGCCGCccgcugCGCGGAcGCGGUCGa -3'
miRNA:   3'- -GC-GCGGUGcua---GCGCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 42021 0.69 0.553234
Target:  5'- uGuCGCCGCGG-CGCGcGAUGCGuacaaggCGGa -3'
miRNA:   3'- gC-GCGGUGCUaGCGC-UUACGCua-----GCC- -5'
28131 5' -54.5 NC_005887.1 + 22241 0.71 0.439237
Target:  5'- uCGCGUgguuCACGAUCaGCGAcgguggcgcgcAgcagGCGAUCGGa -3'
miRNA:   3'- -GCGCG----GUGCUAG-CGCU-----------Ua---CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 16159 0.71 0.429527
Target:  5'- gCGCGCCGagugCGCGA--GCGAUCGa -3'
miRNA:   3'- -GCGCGGUgcuaGCGCUuaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 40768 0.72 0.365282
Target:  5'- gCGCGCCGCGcgcCGcCGAGccgGCGGUCGa -3'
miRNA:   3'- -GCGCGGUGCua-GC-GCUUa--CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 29964 0.78 0.168167
Target:  5'- aGCGCCGCGAacaccgccgCGCGGAUGCuGUCGa -3'
miRNA:   3'- gCGCGGUGCUa--------GCGCUUACGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 9248 0.78 0.172838
Target:  5'- cCGCGUCgGCGAUCGCGucuaucugugcAcgGCGGUCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGC-----------UuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 1935 0.76 0.226217
Target:  5'- gGCGUCAUG--CGUGAcgGCGAUCGGu -3'
miRNA:   3'- gCGCGGUGCuaGCGCUuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14720 0.75 0.251217
Target:  5'- gGCGCgGCGAUCGCGcagGCGAcgaUCGa -3'
miRNA:   3'- gCGCGgUGCUAGCGCuuaCGCU---AGCc -5'
28131 5' -54.5 NC_005887.1 + 919 0.75 0.26455
Target:  5'- cCGCGUCGCGAcccgcaUCGCGAGUGCcccGAgugcuUCGGc -3'
miRNA:   3'- -GCGCGGUGCU------AGCGCUUACG---CU-----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 11562 0.75 0.271429
Target:  5'- gCGCGCgGCGGUCGCGGA----AUCGGg -3'
miRNA:   3'- -GCGCGgUGCUAGCGCUUacgcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 24916 0.73 0.318873
Target:  5'- aGCaGCCGgaucggcaccguuguCGAUCGCGAcgcGUGCGcgCGGg -3'
miRNA:   3'- gCG-CGGU---------------GCUAGCGCU---UACGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 37401 0.73 0.360093
Target:  5'- gGCGCUgcGCGGUCGCGAcugccugcacgccagGUGCGGagUGGa -3'
miRNA:   3'- gCGCGG--UGCUAGCGCU---------------UACGCUa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.