miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 14876 0.66 0.749861
Target:  5'- aGCGUCGCGGcCGCcAGauUGAUCGGg -3'
miRNA:   3'- gCGCGGUGCUaGCGcUUacGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 39457 0.67 0.663437
Target:  5'- uCGCGaCCACGGUUGCGccgcCGGccUCGGu -3'
miRNA:   3'- -GCGC-GGUGCUAGCGCuuacGCU--AGCC- -5'
28131 5' -54.5 NC_005887.1 + 8996 0.68 0.630229
Target:  5'- gGCGCUcuGCGucgCGCGGAUcGCGAacguuccguccUCGGu -3'
miRNA:   3'- gCGCGG--UGCua-GCGCUUA-CGCU-----------AGCC- -5'
28131 5' -54.5 NC_005887.1 + 14079 0.81 0.110577
Target:  5'- gCGCGCCgGCGGUUGCGGAgGCGcgCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGCUUaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 22620 0.66 0.73936
Target:  5'- aGCGUCucgggcauguCGAUCGCGGAcggcaUGCGcagCGGc -3'
miRNA:   3'- gCGCGGu---------GCUAGCGCUU-----ACGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 8932 0.66 0.72875
Target:  5'- gGCGUCGCGAUCuCGAcggGCGcgcCGGc -3'
miRNA:   3'- gCGCGGUGCUAGcGCUua-CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 40579 0.66 0.72875
Target:  5'- gCGCGCCGCG-UgGUGGAUGcCGAa--- -3'
miRNA:   3'- -GCGCGGUGCuAgCGCUUAC-GCUagcc -5'
28131 5' -54.5 NC_005887.1 + 18464 0.66 0.722336
Target:  5'- gGCGCCGCGGcguaggccaucggguUCGCGA--GCGc-CGGc -3'
miRNA:   3'- gCGCGGUGCU---------------AGCGCUuaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 27407 0.66 0.696378
Target:  5'- gCGCGCCGCug-CGCGug-GCGcaGUCGa -3'
miRNA:   3'- -GCGCGGUGcuaGCGCuuaCGC--UAGCc -5'
28131 5' -54.5 NC_005887.1 + 23250 0.67 0.663437
Target:  5'- cCG-GCCGUGAUCGCGAGcGCGA-CGa -3'
miRNA:   3'- -GCgCGGUGCUAGCGCUUaCGCUaGCc -5'
28131 5' -54.5 NC_005887.1 + 13334 0.67 0.685446
Target:  5'- uGCGCCuuuguguCGAUCGgcaacgaauCGAcgGCGGUCa- -3'
miRNA:   3'- gCGCGGu------GCUAGC---------GCUuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 6881 0.66 0.707247
Target:  5'- cCGCGCCACGuagcgccaGUCGCGca-GCGugaGGc -3'
miRNA:   3'- -GCGCGGUGC--------UAGCGCuuaCGCuagCC- -5'
28131 5' -54.5 NC_005887.1 + 17922 0.66 0.749861
Target:  5'- gGC-CCACGucGUCGCGAG-GUuGUCGGu -3'
miRNA:   3'- gCGcGGUGC--UAGCGCUUaCGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 3783 0.67 0.674462
Target:  5'- uGCGCg--GAUCGCGGucgGCGcgCGGc -3'
miRNA:   3'- gCGCGgugCUAGCGCUua-CGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 2312 0.66 0.746723
Target:  5'- gCGCGcCCAUGcucGUCGCGAcgacuuccgaccggAUGCGccagccgcccAUCGGu -3'
miRNA:   3'- -GCGC-GGUGC---UAGCGCU--------------UACGC----------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 22950 0.66 0.718042
Target:  5'- uGCGCCACcaGcgCGCGAGgaucugauaGCGGcCGGc -3'
miRNA:   3'- gCGCGGUG--CuaGCGCUUa--------CGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 31360 0.67 0.673361
Target:  5'- uGCGCCGaugcCGGUCGagcucgaCGAG-GCGAUCGa -3'
miRNA:   3'- gCGCGGU----GCUAGC-------GCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 27290 0.67 0.652383
Target:  5'- uGCGCCGCGAUgCGCccGUGUucucGAUCa- -3'
miRNA:   3'- gCGCGGUGCUA-GCGcuUACG----CUAGcc -5'
28131 5' -54.5 NC_005887.1 + 36913 0.66 0.73936
Target:  5'- gCGCGUCGCGAUCcaGCGcaagGCuGUCGa -3'
miRNA:   3'- -GCGCGGUGCUAG--CGCuua-CGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 16582 0.66 0.72875
Target:  5'- gGCGCCgGCG---GCGAc-GCGAUCGGc -3'
miRNA:   3'- gCGCGG-UGCuagCGCUuaCGCUAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.