miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 42021 0.69 0.553234
Target:  5'- uGuCGCCGCGG-CGCGcGAUGCGuacaaggCGGa -3'
miRNA:   3'- gC-GCGGUGCUaGCGC-UUACGCua-----GCC- -5'
28131 5' -54.5 NC_005887.1 + 41902 0.7 0.488531
Target:  5'- gGCGCCGCcaGAUCGCGug-GUcgucgcccuucacGAUCGGc -3'
miRNA:   3'- gCGCGGUG--CUAGCGCuuaCG-------------CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 41726 0.67 0.652383
Target:  5'- aCGgGCgGCGAUC-CGAucccgGCGcgCGGg -3'
miRNA:   3'- -GCgCGgUGCUAGcGCUua---CGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 41385 0.68 0.586017
Target:  5'- gGCGUCACGAcCGUGA-UGCGGUguuccuugccCGGc -3'
miRNA:   3'- gCGCGGUGCUaGCGCUuACGCUA----------GCC- -5'
28131 5' -54.5 NC_005887.1 + 41021 0.72 0.38295
Target:  5'- cCGCGCCgaaGCGGUCGaGcAUGCGcUCGGc -3'
miRNA:   3'- -GCGCGG---UGCUAGCgCuUACGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 40814 0.71 0.44907
Target:  5'- gCGCGCCaacgGCGAUCGCcucGAcGCGggCGGc -3'
miRNA:   3'- -GCGCGG----UGCUAGCGc--UUaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 40768 0.72 0.365282
Target:  5'- gCGCGCCGCGcgcCGcCGAGccgGCGGUCGa -3'
miRNA:   3'- -GCGCGGUGCua-GC-GCUUa--CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 40738 0.68 0.630229
Target:  5'- gCGCGCCAgGugcaggauggUGCGGccgGUGAUCGGc -3'
miRNA:   3'- -GCGCGGUgCua--------GCGCUua-CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 40579 0.66 0.72875
Target:  5'- gCGCGCCGCG-UgGUGGAUGcCGAa--- -3'
miRNA:   3'- -GCGCGGUGCuAgCGCUUAC-GCUagcc -5'
28131 5' -54.5 NC_005887.1 + 40151 0.69 0.564109
Target:  5'- gCGCGCCGCGcUCGCcGcGUGUGAgcugCGc -3'
miRNA:   3'- -GCGCGGUGCuAGCG-CuUACGCUa---GCc -5'
28131 5' -54.5 NC_005887.1 + 40079 0.7 0.499955
Target:  5'- cCGCGCCAUGAU-GCGcAccGCGAcguccugcaugUCGGg -3'
miRNA:   3'- -GCGCGGUGCUAgCGC-UuaCGCU-----------AGCC- -5'
28131 5' -54.5 NC_005887.1 + 39457 0.67 0.663437
Target:  5'- uCGCGaCCACGGUUGCGccgcCGGccUCGGu -3'
miRNA:   3'- -GCGC-GGUGCUAGCGCuuacGCU--AGCC- -5'
28131 5' -54.5 NC_005887.1 + 39398 0.69 0.521021
Target:  5'- gGCGCaaccgUGGUCGCGAccGCGuUCGGc -3'
miRNA:   3'- gCGCGgu---GCUAGCGCUuaCGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 37450 0.67 0.662333
Target:  5'- gGCGCUugccugcGCGGUuugcagugCGcCGGAUGCGAUCaGGg -3'
miRNA:   3'- gCGCGG-------UGCUA--------GC-GCUUACGCUAG-CC- -5'
28131 5' -54.5 NC_005887.1 + 37401 0.73 0.360093
Target:  5'- gGCGCUgcGCGGUCGCGAcugccugcacgccagGUGCGGagUGGa -3'
miRNA:   3'- gCGCGG--UGCUAGCGCU---------------UACGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 36913 0.66 0.73936
Target:  5'- gCGCGUCGCGAUCcaGCGcaagGCuGUCGa -3'
miRNA:   3'- -GCGCGGUGCUAG--CGCuua-CGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 35834 0.67 0.652383
Target:  5'- uGCGCCGCGucggcguagaucAUCGCcugcgGAuUGCGcUCGGc -3'
miRNA:   3'- gCGCGGUGC------------UAGCG-----CUuACGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 35771 0.67 0.685446
Target:  5'- aCGCGCgGCuggugGAUCaCGAuguugAUGCGAUCGa -3'
miRNA:   3'- -GCGCGgUG-----CUAGcGCU-----UACGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 34699 0.71 0.459024
Target:  5'- gCGCGCCucguCGA-CGCGAAcgGCGAaUGGc -3'
miRNA:   3'- -GCGCGGu---GCUaGCGCUUa-CGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 34371 0.67 0.674462
Target:  5'- aGCGCCccGCGuAUCa-GAGUGCGGcCGGg -3'
miRNA:   3'- gCGCGG--UGC-UAGcgCUUACGCUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.