miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 33801 0.68 0.619149
Target:  5'- gCGCGgacCCACGGccaccaCGCGggUGUcaGGUCGGc -3'
miRNA:   3'- -GCGC---GGUGCUa-----GCGCuuACG--CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 33214 0.7 0.469093
Target:  5'- aCGCGCCGCacuggcacucGGUCGCGccGUGCuccuUCGGg -3'
miRNA:   3'- -GCGCGGUG----------CUAGCGCu-UACGcu--AGCC- -5'
28131 5' -54.5 NC_005887.1 + 32457 0.66 0.72875
Target:  5'- gCGCaGCCACug-CGCGGcGUGCgGAUCGa -3'
miRNA:   3'- -GCG-CGGUGcuaGCGCU-UACG-CUAGCc -5'
28131 5' -54.5 NC_005887.1 + 32361 0.66 0.696378
Target:  5'- gCGCGCCggcuggcccgACGAUCGCcccGUGUGGacCGGa -3'
miRNA:   3'- -GCGCGG----------UGCUAGCGcu-UACGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 31563 0.73 0.323627
Target:  5'- cCGCGCCGCGcgCGCG---GCaAUCGGu -3'
miRNA:   3'- -GCGCGGUGCuaGCGCuuaCGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 31360 0.67 0.673361
Target:  5'- uGCGCCGaugcCGGUCGagcucgaCGAG-GCGAUCGa -3'
miRNA:   3'- gCGCGGU----GCUAGC-------GCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 30824 0.7 0.50939
Target:  5'- cCGCGCgCACGGUCGagcugacCGAcgGCGAagUCGc -3'
miRNA:   3'- -GCGCG-GUGCUAGC-------GCUuaCGCU--AGCc -5'
28131 5' -54.5 NC_005887.1 + 30729 0.68 0.586017
Target:  5'- uCGCGCUGCGuggccuUCGCGAcuucGCcGUCGGu -3'
miRNA:   3'- -GCGCGGUGCu-----AGCGCUua--CGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 29964 0.78 0.168167
Target:  5'- aGCGCCGCGAacaccgccgCGCGGAUGCuGUCGa -3'
miRNA:   3'- gCGCGGUGCUa--------GCGCUUACGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 29712 0.73 0.323627
Target:  5'- uCGCGCCGCG--CGUGAGUGaCGA-CGGc -3'
miRNA:   3'- -GCGCGGUGCuaGCGCUUAC-GCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 28570 0.69 0.553234
Target:  5'- gCGuCGCCGCccgcugCGCGGAcGCGGUCGa -3'
miRNA:   3'- -GC-GCGGUGcua---GCGCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 28376 0.67 0.674462
Target:  5'- aCGCGUCgACGGcuUCGCGGcUGuCGAUCa- -3'
miRNA:   3'- -GCGCGG-UGCU--AGCGCUuAC-GCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 28305 0.71 0.410494
Target:  5'- aGCGCCGC--UCGCGAAgcUGCGcgCGc -3'
miRNA:   3'- gCGCGGUGcuAGCGCUU--ACGCuaGCc -5'
28131 5' -54.5 NC_005887.1 + 27407 0.66 0.696378
Target:  5'- gCGCGCCGCug-CGCGug-GCGcaGUCGa -3'
miRNA:   3'- -GCGCGGUGcuaGCGCuuaCGC--UAGCc -5'
28131 5' -54.5 NC_005887.1 + 27344 0.66 0.749861
Target:  5'- uGCGCCACGcgCaGCGGc-GCGcagacgagcGUCGGc -3'
miRNA:   3'- gCGCGGUGCuaG-CGCUuaCGC---------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 27290 0.67 0.652383
Target:  5'- uGCGCCGCGAUgCGCccGUGUucucGAUCa- -3'
miRNA:   3'- gCGCGGUGCUA-GCGcuUACG----CUAGcc -5'
28131 5' -54.5 NC_005887.1 + 24993 0.7 0.469093
Target:  5'- cCGCGUCGCGAUCGacaacGGUGcCGAUcCGGc -3'
miRNA:   3'- -GCGCGGUGCUAGCgc---UUAC-GCUA-GCC- -5'
28131 5' -54.5 NC_005887.1 + 24968 0.68 0.630229
Target:  5'- uGCG-CGCGGcCGCGAggGacaGGUCGGg -3'
miRNA:   3'- gCGCgGUGCUaGCGCUuaCg--CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 24916 0.73 0.318873
Target:  5'- aGCaGCCGgaucggcaccguuguCGAUCGCGAcgcGUGCGcgCGGg -3'
miRNA:   3'- gCG-CGGU---------------GCUAGCGCU---UACGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 24260 0.66 0.707247
Target:  5'- aGCaGCCACGGcgagUCGcCGGAUagcGCGAUCa- -3'
miRNA:   3'- gCG-CGGUGCU----AGC-GCUUA---CGCUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.