miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 41917 0.67 0.322458
Target:  5'- -cCCGCACgu-GCUGAGCGGCucgcaGCUGAg -3'
miRNA:   3'- ccGGCGUGaguCGGCUCGUCG-----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 31275 0.67 0.322458
Target:  5'- cGGCCGCGucgaucgcCUC-GUCGAGCucgaccGGCAUCGGc -3'
miRNA:   3'- -CCGGCGU--------GAGuCGGCUCG------UCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11865 0.67 0.321678
Target:  5'- -uUCGaCGCUCGGCgGucuuucgucguucGGCAGCGCCGGc -3'
miRNA:   3'- ccGGC-GUGAGUCGgC-------------UCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 32763 0.67 0.321678
Target:  5'- cGGCgCGCGCcaugCAGCCGGcucgugcGCAGgAUCGGc -3'
miRNA:   3'- -CCG-GCGUGa---GUCGGCU-------CGUCgUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 23398 0.67 0.31472
Target:  5'- uGCCGCuggCAGCCuGcAGCAGCGCguCGAu -3'
miRNA:   3'- cCGGCGugaGUCGG-C-UCGUCGUG--GCU- -5'
28132 5' -60.2 NC_005887.1 + 11612 0.67 0.31472
Target:  5'- cGCCGCGCgcugCGcGCCGAGCuGCugaucagcuugACCGc -3'
miRNA:   3'- cCGGCGUGa---GU-CGGCUCGuCG-----------UGGCu -5'
28132 5' -60.2 NC_005887.1 + 24859 0.67 0.31472
Target:  5'- aGCCGCugUCGGCC-AGCAcaaucuacUACCGGa -3'
miRNA:   3'- cCGGCGugAGUCGGcUCGUc-------GUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11878 0.67 0.310145
Target:  5'- aGGCCGCcgccugccuuagcguACgaaccgacgCcGCCGAGCAGCgaggacgccGCCGAg -3'
miRNA:   3'- -CCGGCG---------------UGa--------GuCGGCUCGUCG---------UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11309 0.67 0.307124
Target:  5'- cGGCCG-GCUCGGC--AGCgAGCGCCGc -3'
miRNA:   3'- -CCGGCgUGAGUCGgcUCG-UCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 25137 0.67 0.307124
Target:  5'- cGGCCuCACcuucacccuuUCGGCC-AGCGGCACUGc -3'
miRNA:   3'- -CCGGcGUG----------AGUCGGcUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 1864 0.67 0.307124
Target:  5'- cGGCgGCACgUCcuUCGGGUAGCgGCCGAc -3'
miRNA:   3'- -CCGgCGUG-AGucGGCUCGUCG-UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 12111 0.67 0.306372
Target:  5'- uGGCCGCGCagaAGCgccaggaCGAGCAGgcCGCCGu -3'
miRNA:   3'- -CCGGCGUGag-UCG-------GCUCGUC--GUGGCu -5'
28132 5' -60.2 NC_005887.1 + 769 0.68 0.299668
Target:  5'- aGCUGguuCACgUCGG-CGAGCAGCAUCGAc -3'
miRNA:   3'- cCGGC---GUG-AGUCgGCUCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 24892 0.68 0.299668
Target:  5'- uGCCGCgcGCUCGGUCuucuucGCAGCAgCCGGa -3'
miRNA:   3'- cCGGCG--UGAGUCGGcu----CGUCGU-GGCU- -5'
28132 5' -60.2 NC_005887.1 + 29909 0.68 0.292353
Target:  5'- cGGCC-CACUCccacauGCCGcgGGCcucGCGCCGAu -3'
miRNA:   3'- -CCGGcGUGAGu-----CGGC--UCGu--CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 28476 0.68 0.292353
Target:  5'- gGGCCGC-UUCAGCuCGAcgaaguagacGC-GCGCCGGc -3'
miRNA:   3'- -CCGGCGuGAGUCG-GCU----------CGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 23185 0.68 0.288032
Target:  5'- cGUCGCGCUCgcgaucacGGCCGggGGCGGCuacuucaagggccacGCCGAc -3'
miRNA:   3'- cCGGCGUGAG--------UCGGC--UCGUCG---------------UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 13164 0.68 0.288032
Target:  5'- uGCCGCGCgcgCgcagacagcgggagcGGUCGAGCAGgcCGCCGGc -3'
miRNA:   3'- cCGGCGUGa--G---------------UCGGCUCGUC--GUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40154 0.68 0.285179
Target:  5'- cGCCGCGCUC-GCCGcGUgugAGCugCGc -3'
miRNA:   3'- cCGGCGUGAGuCGGCuCG---UCGugGCu -5'
28132 5' -60.2 NC_005887.1 + 2063 0.68 0.285179
Target:  5'- uGCCGCGCUCguaguAGCCGGcCGGCAgguugUCGAu -3'
miRNA:   3'- cCGGCGUGAG-----UCGGCUcGUCGU-----GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.