miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 12204 0.66 0.371835
Target:  5'- aGGacaGCGC-CGcGCCGGGC-GCGCCGGa -3'
miRNA:   3'- -CCgg-CGUGaGU-CGGCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 15494 0.66 0.370972
Target:  5'- uGGCCGCGCgUCAgauggacGCCGGcCAGUuuCCGGa -3'
miRNA:   3'- -CCGGCGUG-AGU-------CGGCUcGUCGu-GGCU- -5'
28132 5' -60.2 NC_005887.1 + 14751 0.66 0.365817
Target:  5'- cGCCGCgacgagcccgaucguGCggggCAGCgucgaaccggcgaCGGGCAGCACCGc -3'
miRNA:   3'- cCGGCG---------------UGa---GUCG-------------GCUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 40771 0.66 0.363257
Target:  5'- cGCCGCGCgccGCCGAGcCGGCgguCGAg -3'
miRNA:   3'- cCGGCGUGaguCGGCUC-GUCGug-GCU- -5'
28132 5' -60.2 NC_005887.1 + 12955 0.66 0.363257
Target:  5'- aGCCGCgacGCUacagcaaucCAGaCCGAagcggcgacccGCGGCACCGAc -3'
miRNA:   3'- cCGGCG---UGA---------GUC-GGCU-----------CGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 5392 0.66 0.362407
Target:  5'- aGCCaGCGCgacCGGUgaaccggCGGGCGGCGCCGc -3'
miRNA:   3'- cCGG-CGUGa--GUCG-------GCUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 25090 0.66 0.360711
Target:  5'- aGGCCGCcgccgucggauuucGCgaccgguugucCGGCCGAGaucCAGCGCCGc -3'
miRNA:   3'- -CCGGCG--------------UGa----------GUCGGCUC---GUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 23515 0.66 0.354818
Target:  5'- cGGCCGCGCUgacgaacgcgCGGgUGAGCuGGCAgCGu -3'
miRNA:   3'- -CCGGCGUGA----------GUCgGCUCG-UCGUgGCu -5'
28132 5' -60.2 NC_005887.1 + 16463 0.66 0.354818
Target:  5'- gGGCaUGCGCUCGaCCGcGCGGCAggauCCGGc -3'
miRNA:   3'- -CCG-GCGUGAGUcGGCuCGUCGU----GGCU- -5'
28132 5' -60.2 NC_005887.1 + 32823 0.67 0.346517
Target:  5'- cGGCUGCAUggcgCGcGCCG-GCGcGCACgCGAg -3'
miRNA:   3'- -CCGGCGUGa---GU-CGGCuCGU-CGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 3524 0.67 0.346517
Target:  5'- -aCCGCAacguGCCGAuGCAGCGCCu- -3'
miRNA:   3'- ccGGCGUgaguCGGCU-CGUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 23369 0.67 0.344055
Target:  5'- gGGCCGCAgugcggcguuguucUUCGGCgCGGGCugcGGCAaCCGc -3'
miRNA:   3'- -CCGGCGU--------------GAGUCG-GCUCG---UCGU-GGCu -5'
28132 5' -60.2 NC_005887.1 + 15390 0.67 0.338357
Target:  5'- cGCCGCGCugaUCGcGCgCGGGCAGCGgaucgUCGAc -3'
miRNA:   3'- cCGGCGUG---AGU-CG-GCUCGUCGU-----GGCU- -5'
28132 5' -60.2 NC_005887.1 + 32714 0.67 0.338357
Target:  5'- aGCCGCGCgguucacccaCGGCgGGGUAGCGCgGc -3'
miRNA:   3'- cCGGCGUGa---------GUCGgCUCGUCGUGgCu -5'
28132 5' -60.2 NC_005887.1 + 2570 0.67 0.338357
Target:  5'- cGCCGCAUggccgugagCGG-CGAGCGGUACgCGGa -3'
miRNA:   3'- cCGGCGUGa--------GUCgGCUCGUCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 7221 0.67 0.330337
Target:  5'- aGG-CGCugUCGGCguCGGGC-GCAUCGAc -3'
miRNA:   3'- -CCgGCGugAGUCG--GCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 15571 0.67 0.330337
Target:  5'- -aCCGCGCUCGauucgcugaucGCCGAagcugagacGCAGCGCaCGGg -3'
miRNA:   3'- ccGGCGUGAGU-----------CGGCU---------CGUCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 4529 0.67 0.330337
Target:  5'- cGGCgGCGuCcCGGUCGAgGCgaugAGCACCGAc -3'
miRNA:   3'- -CCGgCGU-GaGUCGGCU-CG----UCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 13623 0.67 0.330337
Target:  5'- cGGCC-UGCUCGGgCG-GCAGCgcaucGCCGAu -3'
miRNA:   3'- -CCGGcGUGAGUCgGCuCGUCG-----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 41917 0.67 0.322458
Target:  5'- -cCCGCACgu-GCUGAGCGGCucgcaGCUGAg -3'
miRNA:   3'- ccGGCGUGaguCGGCUCGUCG-----UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.