miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 41025 0.72 0.160572
Target:  5'- aGGcCCGCGCcgaagCGGUCGAGCAuGCGCuCGGc -3'
miRNA:   3'- -CC-GGCGUGa----GUCGGCUCGU-CGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 11376 0.71 0.164976
Target:  5'- uGCgGCGCUCGcuGCCGAGCcggccGCugCGAg -3'
miRNA:   3'- cCGgCGUGAGU--CGGCUCGu----CGugGCU- -5'
28132 5' -60.2 NC_005887.1 + 15333 0.71 0.164976
Target:  5'- cGGCgGaCGCUC-GCCGcGCAGCACUGc -3'
miRNA:   3'- -CCGgC-GUGAGuCGGCuCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 10030 0.71 0.169487
Target:  5'- cGGCCGCGCU-GGCaCGAacaGCGGCAUCa- -3'
miRNA:   3'- -CCGGCGUGAgUCG-GCU---CGUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 15632 0.71 0.171322
Target:  5'- cGGCCGgGCUC-GCCGAucagggcgccgugucGCAgaugcGCGCCGAg -3'
miRNA:   3'- -CCGGCgUGAGuCGGCU---------------CGU-----CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 4243 0.71 0.178842
Target:  5'- cGCCGaCGCUCGGCCGcacGCAGU-CUGAa -3'
miRNA:   3'- cCGGC-GUGAGUCGGCu--CGUCGuGGCU- -5'
28132 5' -60.2 NC_005887.1 + 5560 0.71 0.178842
Target:  5'- cGGCCgGUGCUgCGGCCGGuGCuGCGCCa- -3'
miRNA:   3'- -CCGG-CGUGA-GUCGGCU-CGuCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 37297 0.71 0.182223
Target:  5'- cGUCGCGCcagacgguuucgauUCGGUCGucgcAGCAGCGCCGGc -3'
miRNA:   3'- cCGGCGUG--------------AGUCGGC----UCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 949 0.71 0.183689
Target:  5'- aGGCCGCcugACUCGuCCG-GCGGCGCgGGc -3'
miRNA:   3'- -CCGGCG---UGAGUcGGCuCGUCGUGgCU- -5'
28132 5' -60.2 NC_005887.1 + 17815 0.71 0.183689
Target:  5'- cGGgCGCcaUCAGCCGcGCGGCcguGCCGAg -3'
miRNA:   3'- -CCgGCGugAGUCGGCuCGUCG---UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 31452 0.71 0.183689
Target:  5'- cGGCaCGCACcgcUAGCCGAGC-GCGUCGAg -3'
miRNA:   3'- -CCG-GCGUGa--GUCGGCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 13449 0.71 0.188652
Target:  5'- cGCCGCGCcggccuUCAGCgCGAGCGccauCGCCGGg -3'
miRNA:   3'- cCGGCGUG------AGUCG-GCUCGUc---GUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 28211 0.71 0.188652
Target:  5'- cGCCGCGCgucUCGGCgguuuUGAGCAGCGCgCGc -3'
miRNA:   3'- cCGGCGUG---AGUCG-----GCUCGUCGUG-GCu -5'
28132 5' -60.2 NC_005887.1 + 42047 0.7 0.198933
Target:  5'- aGGCCGUGCUgcugaUAGgCGAGC-GCGCCGc -3'
miRNA:   3'- -CCGGCGUGA-----GUCgGCUCGuCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 41671 0.7 0.204254
Target:  5'- gGGCCGCGC-CGGCCGccgcaccugGGCcGCcgcugGCCGAc -3'
miRNA:   3'- -CCGGCGUGaGUCGGC---------UCGuCG-----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40641 0.7 0.204254
Target:  5'- gGGuuGUACUU-GCuCGAGC-GCGCCGAg -3'
miRNA:   3'- -CCggCGUGAGuCG-GCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 4574 0.7 0.204254
Target:  5'- cGCCGUAgUCGG-CGAGCAGaCGCgCGAu -3'
miRNA:   3'- cCGGCGUgAGUCgGCUCGUC-GUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 32175 0.7 0.209698
Target:  5'- aGGUCgGCGCUCAGCgaUGAGCcAGUGCCa- -3'
miRNA:   3'- -CCGG-CGUGAGUCG--GCUCG-UCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 16897 0.7 0.209698
Target:  5'- aGGuuGCAaaggcugCAGCCGAGCAG-AUCGGc -3'
miRNA:   3'- -CCggCGUga-----GUCGGCUCGUCgUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 10080 0.7 0.220962
Target:  5'- aGCCGCAUUCcGUCGugugGGCGGCccgcGCCGAc -3'
miRNA:   3'- cCGGCGUGAGuCGGC----UCGUCG----UGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.