Results 21 - 40 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 5392 | 0.66 | 0.362407 |
Target: 5'- aGCCaGCGCgacCGGUgaaccggCGGGCGGCGCCGc -3' miRNA: 3'- cCGG-CGUGa--GUCG-------GCUCGUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 16472 | 0.66 | 0.371835 |
Target: 5'- cGGCCGCgugaGCUucCGGCCG-GCGGCcgucUCGAc -3' miRNA: 3'- -CCGGCG----UGA--GUCGGCuCGUCGu---GGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 14751 | 0.66 | 0.365817 |
Target: 5'- cGCCGCgacgagcccgaucguGCggggCAGCgucgaaccggcgaCGGGCAGCACCGc -3' miRNA: 3'- cCGGCG---------------UGa---GUCG-------------GCUCGUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 28401 | 0.66 | 0.371835 |
Target: 5'- uGCCGCGC-CGGC---GCAGaCGCCGAc -3' miRNA: 3'- cCGGCGUGaGUCGgcuCGUC-GUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 30531 | 0.66 | 0.3894 |
Target: 5'- aGGCgGCcgUCGGCCGAgacgccacGCAGCAgCGu -3' miRNA: 3'- -CCGgCGugAGUCGGCU--------CGUCGUgGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 25090 | 0.66 | 0.360711 |
Target: 5'- aGGCCGCcgccgucggauuucGCgaccgguugucCGGCCGAGaucCAGCGCCGc -3' miRNA: 3'- -CCGGCG--------------UGa----------GUCGGCUC---GUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 23515 | 0.66 | 0.354818 |
Target: 5'- cGGCCGCGCUgacgaacgcgCGGgUGAGCuGGCAgCGu -3' miRNA: 3'- -CCGGCGUGA----------GUCgGCUCG-UCGUgGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 26424 | 0.66 | 0.375305 |
Target: 5'- cGGCCGCGCgggaacgcgcgcugCAGCCGcGCGagauCCGAc -3' miRNA: 3'- -CCGGCGUGa-------------GUCGGCuCGUcgu-GGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 16463 | 0.66 | 0.354818 |
Target: 5'- gGGCaUGCGCUCGaCCGcGCGGCAggauCCGGc -3' miRNA: 3'- -CCG-GCGUGAGUcGGCuCGUCGU----GGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 3524 | 0.67 | 0.346517 |
Target: 5'- -aCCGCAacguGCCGAuGCAGCGCCu- -3' miRNA: 3'- ccGGCGUgaguCGGCU-CGUCGUGGcu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 12111 | 0.67 | 0.306372 |
Target: 5'- uGGCCGCGCagaAGCgccaggaCGAGCAGgcCGCCGu -3' miRNA: 3'- -CCGGCGUGag-UCG-------GCUCGUC--GUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 23398 | 0.67 | 0.31472 |
Target: 5'- uGCCGCuggCAGCCuGcAGCAGCGCguCGAu -3' miRNA: 3'- cCGGCGugaGUCGG-C-UCGUCGUG--GCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 41917 | 0.67 | 0.322458 |
Target: 5'- -cCCGCACgu-GCUGAGCGGCucgcaGCUGAg -3' miRNA: 3'- ccGGCGUGaguCGGCUCGUCG-----UGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 32763 | 0.67 | 0.321678 |
Target: 5'- cGGCgCGCGCcaugCAGCCGGcucgugcGCAGgAUCGGc -3' miRNA: 3'- -CCG-GCGUGa---GUCGGCU-------CGUCgUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 31275 | 0.67 | 0.322458 |
Target: 5'- cGGCCGCGucgaucgcCUC-GUCGAGCucgaccGGCAUCGGc -3' miRNA: 3'- -CCGGCGU--------GAGuCGGCUCG------UCGUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 15571 | 0.67 | 0.330337 |
Target: 5'- -aCCGCGCUCGauucgcugaucGCCGAagcugagacGCAGCGCaCGGg -3' miRNA: 3'- ccGGCGUGAGU-----------CGGCU---------CGUCGUG-GCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 32714 | 0.67 | 0.338357 |
Target: 5'- aGCCGCGCgguucacccaCGGCgGGGUAGCGCgGc -3' miRNA: 3'- cCGGCGUGa---------GUCGgCUCGUCGUGgCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 2570 | 0.67 | 0.338357 |
Target: 5'- cGCCGCAUggccgugagCGG-CGAGCGGUACgCGGa -3' miRNA: 3'- cCGGCGUGa--------GUCgGCUCGUCGUG-GCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 15390 | 0.67 | 0.338357 |
Target: 5'- cGCCGCGCugaUCGcGCgCGGGCAGCGgaucgUCGAc -3' miRNA: 3'- cCGGCGUG---AGU-CG-GCUCGUCGU-----GGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 7221 | 0.67 | 0.330337 |
Target: 5'- aGG-CGCugUCGGCguCGGGC-GCAUCGAc -3' miRNA: 3'- -CCgGCGugAGUCG--GCUCGuCGUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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