Results 1 - 20 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 16463 | 0.66 | 0.354818 |
Target: 5'- gGGCaUGCGCUCGaCCGcGCGGCAggauCCGGc -3' miRNA: 3'- -CCG-GCGUGAGUcGGCuCGUCGU----GGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 40771 | 0.66 | 0.363257 |
Target: 5'- cGCCGCGCgccGCCGAGcCGGCgguCGAg -3' miRNA: 3'- cCGGCGUGaguCGGCUC-GUCGug-GCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 12955 | 0.66 | 0.363257 |
Target: 5'- aGCCGCgacGCUacagcaaucCAGaCCGAagcggcgacccGCGGCACCGAc -3' miRNA: 3'- cCGGCG---UGA---------GUC-GGCU-----------CGUCGUGGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 23515 | 0.66 | 0.354818 |
Target: 5'- cGGCCGCGCUgacgaacgcgCGGgUGAGCuGGCAgCGu -3' miRNA: 3'- -CCGGCGUGA----------GUCgGCUCG-UCGUgGCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 26424 | 0.66 | 0.375305 |
Target: 5'- cGGCCGCGCgggaacgcgcgcugCAGCCGcGCGagauCCGAc -3' miRNA: 3'- -CCGGCGUGa-------------GUCGGCuCGUcgu-GGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 25523 | 0.66 | 0.371835 |
Target: 5'- uGGCgGCAUaaUCGucgccGCCGAGCGGUGCgCGu -3' miRNA: 3'- -CCGgCGUG--AGU-----CGGCUCGUCGUG-GCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 31407 | 0.66 | 0.38055 |
Target: 5'- uGCCGUgguUCAGCgGGGUAGgGCUGAa -3' miRNA: 3'- cCGGCGug-AGUCGgCUCGUCgUGGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 12600 | 0.66 | 0.38055 |
Target: 5'- cGGCCGCgacGCUCGGCgugcUGAcGCAGaagcCCGAc -3' miRNA: 3'- -CCGGCG---UGAGUCG----GCU-CGUCgu--GGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 19157 | 0.66 | 0.388509 |
Target: 5'- cGCUgGUACUCGGCaccgauuauuccgUGAGCGGCGCgGGc -3' miRNA: 3'- cCGG-CGUGAGUCG-------------GCUCGUCGUGgCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 15494 | 0.66 | 0.370972 |
Target: 5'- uGGCCGCGCgUCAgauggacGCCGGcCAGUuuCCGGa -3' miRNA: 3'- -CCGGCGUG-AGU-------CGGCUcGUCGu-GGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 5392 | 0.66 | 0.362407 |
Target: 5'- aGCCaGCGCgacCGGUgaaccggCGGGCGGCGCCGc -3' miRNA: 3'- cCGG-CGUGa--GUCG-------GCUCGUCGUGGCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 41602 | 0.66 | 0.38055 |
Target: 5'- cGGCCcagGUGCggCGGCCGGcGCGGC-CCGu -3' miRNA: 3'- -CCGG---CGUGa-GUCGGCU-CGUCGuGGCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 16516 | 0.66 | 0.3894 |
Target: 5'- aGGCCGauCGCgUC-GCCGc-CGGCGCCGAg -3' miRNA: 3'- -CCGGC--GUG-AGuCGGCucGUCGUGGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 30531 | 0.66 | 0.3894 |
Target: 5'- aGGCgGCcgUCGGCCGAgacgccacGCAGCAgCGu -3' miRNA: 3'- -CCGgCGugAGUCGGCU--------CGUCGUgGCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 24974 | 0.66 | 0.378796 |
Target: 5'- cGGCCGCGagggaCAggucgggguaguuGCCGAGCGucagcucGCGCCGGn -3' miRNA: 3'- -CCGGCGUga---GU-------------CGGCUCGU-------CGUGGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 25090 | 0.66 | 0.360711 |
Target: 5'- aGGCCGCcgccgucggauuucGCgaccgguugucCGGCCGAGaucCAGCGCCGc -3' miRNA: 3'- -CCGGCG--------------UGa----------GUCGGCUC---GUCGUGGCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 34674 | 0.66 | 0.3894 |
Target: 5'- cGGauCCGcCACguuGUCGAGCAGCAgCGGg -3' miRNA: 3'- -CC--GGC-GUGaguCGGCUCGUCGUgGCU- -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 3164 | 0.66 | 0.3894 |
Target: 5'- uGCCGCGcCUCgacaAGuUCGGGCAGCuGCCGc -3' miRNA: 3'- cCGGCGU-GAG----UC-GGCUCGUCG-UGGCu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 35330 | 0.66 | 0.388509 |
Target: 5'- uGCCGCGCgccgcggCGGCCGGccacgagcuucacGCccGGCACCa- -3' miRNA: 3'- cCGGCGUGa------GUCGGCU-------------CG--UCGUGGcu -5' |
|||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 12204 | 0.66 | 0.371835 |
Target: 5'- aGGacaGCGC-CGcGCCGGGC-GCGCCGGa -3' miRNA: 3'- -CCgg-CGUGaGU-CGGCUCGuCGUGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home