miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 769 0.68 0.299668
Target:  5'- aGCUGguuCACgUCGG-CGAGCAGCAUCGAc -3'
miRNA:   3'- cCGGC---GUG-AGUCgGCUCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 949 0.71 0.183689
Target:  5'- aGGCCGCcugACUCGuCCG-GCGGCGCgGGc -3'
miRNA:   3'- -CCGGCG---UGAGUcGGCuCGUCGUGgCU- -5'
28132 5' -60.2 NC_005887.1 + 1406 0.68 0.278144
Target:  5'- gGGCC-CGCUCGGC--AGCGGCAagaCGAa -3'
miRNA:   3'- -CCGGcGUGAGUCGgcUCGUCGUg--GCU- -5'
28132 5' -60.2 NC_005887.1 + 1864 0.67 0.307124
Target:  5'- cGGCgGCACgUCcuUCGGGUAGCgGCCGAc -3'
miRNA:   3'- -CCGgCGUG-AGucGGCUCGUCG-UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 2063 0.68 0.285179
Target:  5'- uGCCGCGCUCguaguAGCCGGcCGGCAgguugUCGAu -3'
miRNA:   3'- cCGGCGUGAG-----UCGGCUcGUCGU-----GGCU- -5'
28132 5' -60.2 NC_005887.1 + 2190 0.69 0.251386
Target:  5'- cGGCCGCGgUgA-UCGGGCAGCgcaaACCGAu -3'
miRNA:   3'- -CCGGCGUgAgUcGGCUCGUCG----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 2570 0.67 0.338357
Target:  5'- cGCCGCAUggccgugagCGG-CGAGCGGUACgCGGa -3'
miRNA:   3'- cCGGCGUGa--------GUCgGCUCGUCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 2704 0.69 0.238821
Target:  5'- gGGCgGCAagCGGCCGAGCcGCGCgaCGAc -3'
miRNA:   3'- -CCGgCGUgaGUCGGCUCGuCGUG--GCU- -5'
28132 5' -60.2 NC_005887.1 + 3164 0.66 0.3894
Target:  5'- uGCCGCGcCUCgacaAGuUCGGGCAGCuGCCGc -3'
miRNA:   3'- cCGGCGU-GAG----UC-GGCUCGUCG-UGGCu -5'
28132 5' -60.2 NC_005887.1 + 3524 0.67 0.346517
Target:  5'- -aCCGCAacguGCCGAuGCAGCGCCu- -3'
miRNA:   3'- ccGGCGUgaguCGGCU-CGUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 4243 0.71 0.178842
Target:  5'- cGCCGaCGCUCGGCCGcacGCAGU-CUGAa -3'
miRNA:   3'- cCGGC-GUGAGUCGGCu--CGUCGuGGCU- -5'
28132 5' -60.2 NC_005887.1 + 4300 0.74 0.100411
Target:  5'- cGGCCGaGCgUCGGCgCGAGCAGCACg-- -3'
miRNA:   3'- -CCGGCgUG-AGUCG-GCUCGUCGUGgcu -5'
28132 5' -60.2 NC_005887.1 + 4529 0.67 0.330337
Target:  5'- cGGCgGCGuCcCGGUCGAgGCgaugAGCACCGAc -3'
miRNA:   3'- -CCGgCGU-GaGUCGGCU-CG----UCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 4574 0.7 0.204254
Target:  5'- cGCCGUAgUCGG-CGAGCAGaCGCgCGAu -3'
miRNA:   3'- cCGGCGUgAGUCgGCUCGUC-GUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 4597 0.7 0.223276
Target:  5'- aGGCCGCgcagaugcaacagauGCUC-GCC--GCGGCGCCGGu -3'
miRNA:   3'- -CCGGCG---------------UGAGuCGGcuCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 5195 0.68 0.264491
Target:  5'- gGGCagCGCGgUCAuGCCGAGCuuggcgAGCACCu- -3'
miRNA:   3'- -CCG--GCGUgAGU-CGGCUCG------UCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 5280 0.69 0.245036
Target:  5'- --aCGCAgUCGcCCGAGCAGCGCgCGGc -3'
miRNA:   3'- ccgGCGUgAGUcGGCUCGUCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 5392 0.66 0.362407
Target:  5'- aGCCaGCGCgacCGGUgaaccggCGGGCGGCGCCGc -3'
miRNA:   3'- cCGG-CGUGa--GUCG-------GCUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 5486 0.74 0.100411
Target:  5'- uGGUCGCGC-CGGUCGcuGCGGCGCCGc -3'
miRNA:   3'- -CCGGCGUGaGUCGGCu-CGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 5502 0.75 0.094921
Target:  5'- cGGCCGCAgcacCGGCC--GCAGCACCGGc -3'
miRNA:   3'- -CCGGCGUga--GUCGGcuCGUCGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.