miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 13635 1.1 0.000182
Target:  5'- cGGCCGCACUCAGCCGAGCAGCACCGAc -3'
miRNA:   3'- -CCGGCGUGAGUCGGCUCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40623 0.8 0.038714
Target:  5'- uGGCCGCACaUCGGCaagacaggcacugaCGAGCGcGCGCCGAu -3'
miRNA:   3'- -CCGGCGUG-AGUCG--------------GCUCGU-CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 24544 0.77 0.069481
Target:  5'- cGGCCGCACcuUCGGCCGGGC-GC-CCa- -3'
miRNA:   3'- -CCGGCGUG--AGUCGGCUCGuCGuGGcu -5'
28132 5' -60.2 NC_005887.1 + 24045 0.76 0.082416
Target:  5'- cGCCGC-CUCGcGCuCGAGCAGUggGCCGAg -3'
miRNA:   3'- cCGGCGuGAGU-CG-GCUCGUCG--UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 12360 0.75 0.084784
Target:  5'- aGGCgGUgACguggcaGGCCGAGCAGCACCGc -3'
miRNA:   3'- -CCGgCG-UGag----UCGGCUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 5502 0.75 0.094921
Target:  5'- cGGCCGCAgcacCGGCC--GCAGCACCGGc -3'
miRNA:   3'- -CCGGCGUga--GUCGGcuCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 5486 0.74 0.100411
Target:  5'- uGGUCGCGC-CGGUCGcuGCGGCGCCGc -3'
miRNA:   3'- -CCGGCGUGaGUCGGCu-CGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 4300 0.74 0.100411
Target:  5'- cGGCCGaGCgUCGGCgCGAGCAGCACg-- -3'
miRNA:   3'- -CCGGCgUG-AGUCG-GCUCGUCGUGgcu -5'
28132 5' -60.2 NC_005887.1 + 11487 0.74 0.105902
Target:  5'- cGGCCuguuGCGCUCAGaCGAugccuugGCGGCGCCGGc -3'
miRNA:   3'- -CCGG----CGUGAGUCgGCU-------CGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 8110 0.74 0.106198
Target:  5'- cGCCGCGCUC-GCCGA--GGCGCCGc -3'
miRNA:   3'- cCGGCGUGAGuCGGCUcgUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 21891 0.74 0.106198
Target:  5'- uGGCCGUuucAUUCGGCgCGcccGGCAGCGCCGc -3'
miRNA:   3'- -CCGGCG---UGAGUCG-GC---UCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 24620 0.73 0.136316
Target:  5'- cGGCCGCACgcgUGGUCGAaCAGCugCGu -3'
miRNA:   3'- -CCGGCGUGa--GUCGGCUcGUCGugGCu -5'
28132 5' -60.2 NC_005887.1 + 6911 0.73 0.137823
Target:  5'- uGGCCGCcgagcgaaucccgcaACUCGGCaUGGGCcGCGCCGu -3'
miRNA:   3'- -CCGGCG---------------UGAGUCG-GCUCGuCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 14454 0.72 0.140111
Target:  5'- aGGUCGUACgcgcgCGcGCCGAGCGGCGacUCGAa -3'
miRNA:   3'- -CCGGCGUGa----GU-CGGCUCGUCGU--GGCU- -5'
28132 5' -60.2 NC_005887.1 + 30826 0.72 0.144003
Target:  5'- cGCCGCGCgcaCGGUCGAGCuG-ACCGAc -3'
miRNA:   3'- cCGGCGUGa--GUCGGCUCGuCgUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 25024 0.72 0.144003
Target:  5'- cGGCCGCcgGC-CAGCCG-GUAGCGCaGAa -3'
miRNA:   3'- -CCGGCG--UGaGUCGGCuCGUCGUGgCU- -5'
28132 5' -60.2 NC_005887.1 + 29755 0.72 0.144003
Target:  5'- uGGCUGCGCgugCAGCUGccaAGCaAGCGCCa- -3'
miRNA:   3'- -CCGGCGUGa--GUCGGC---UCG-UCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 10973 0.72 0.147992
Target:  5'- cGGCCgacgucaucuGCGC-CGGCUGcAGguGCACCGAc -3'
miRNA:   3'- -CCGG----------CGUGaGUCGGC-UCguCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 21816 0.72 0.147992
Target:  5'- cGCgGCGCU--GCCGGGC-GCGCCGAa -3'
miRNA:   3'- cCGgCGUGAguCGGCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 25021 0.72 0.156275
Target:  5'- cGGCCGCGCgcaaggCGGCCc-GCGcGCACCGc -3'
miRNA:   3'- -CCGGCGUGa-----GUCGGcuCGU-CGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.