miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 41551 0.69 0.232737
Target:  5'- cGGCgCGCACgcgaAGUC-AGcCAGCGCCGAg -3'
miRNA:   3'- -CCG-GCGUGag--UCGGcUC-GUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 4243 0.71 0.178842
Target:  5'- cGCCGaCGCUCGGCCGcacGCAGU-CUGAa -3'
miRNA:   3'- cCGGC-GUGAGUCGGCu--CGUCGuGGCU- -5'
28132 5' -60.2 NC_005887.1 + 37297 0.71 0.182223
Target:  5'- cGUCGCGCcagacgguuucgauUCGGUCGucgcAGCAGCGCCGGc -3'
miRNA:   3'- cCGGCGUG--------------AGUCGGC----UCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 28211 0.71 0.188652
Target:  5'- cGCCGCGCgucUCGGCgguuuUGAGCAGCGCgCGc -3'
miRNA:   3'- cCGGCGUG---AGUCG-----GCUCGUCGUG-GCu -5'
28132 5' -60.2 NC_005887.1 + 16897 0.7 0.209698
Target:  5'- aGGuuGCAaaggcugCAGCCGAGCAG-AUCGGc -3'
miRNA:   3'- -CCggCGUga-----GUCGGCUCGUCgUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 32175 0.7 0.209698
Target:  5'- aGGUCgGCGCUCAGCgaUGAGCcAGUGCCa- -3'
miRNA:   3'- -CCGG-CGUGAGUCG--GCUCG-UCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 10080 0.7 0.220962
Target:  5'- aGCCGCAUUCcGUCGugugGGCGGCccgcGCCGAc -3'
miRNA:   3'- cCGGCGUGAGuCGGC----UCGUCG----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 4597 0.7 0.223276
Target:  5'- aGGCCGCgcagaugcaacagauGCUC-GCC--GCGGCGCCGGu -3'
miRNA:   3'- -CCGGCG---------------UGAGuCGGcuCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 14631 0.69 0.232737
Target:  5'- aGGgCGCGCUCacggcAGCCGGcGCGGUGCUGc -3'
miRNA:   3'- -CCgGCGUGAG-----UCGGCU-CGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 15632 0.71 0.171322
Target:  5'- cGGCCGgGCUC-GCCGAucagggcgccgugucGCAgaugcGCGCCGAg -3'
miRNA:   3'- -CCGGCgUGAGuCGGCU---------------CGU-----CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 10030 0.71 0.169487
Target:  5'- cGGCCGCGCU-GGCaCGAacaGCGGCAUCa- -3'
miRNA:   3'- -CCGGCGUGAgUCG-GCU---CGUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 21816 0.72 0.147992
Target:  5'- cGCgGCGCU--GCCGGGC-GCGCCGAa -3'
miRNA:   3'- cCGgCGUGAguCGGCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40623 0.8 0.038714
Target:  5'- uGGCCGCACaUCGGCaagacaggcacugaCGAGCGcGCGCCGAu -3'
miRNA:   3'- -CCGGCGUG-AGUCG--------------GCUCGU-CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 24544 0.77 0.069481
Target:  5'- cGGCCGCACcuUCGGCCGGGC-GC-CCa- -3'
miRNA:   3'- -CCGGCGUG--AGUCGGCUCGuCGuGGcu -5'
28132 5' -60.2 NC_005887.1 + 12360 0.75 0.084784
Target:  5'- aGGCgGUgACguggcaGGCCGAGCAGCACCGc -3'
miRNA:   3'- -CCGgCG-UGag----UCGGCUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 5502 0.75 0.094921
Target:  5'- cGGCCGCAgcacCGGCC--GCAGCACCGGc -3'
miRNA:   3'- -CCGGCGUga--GUCGGcuCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 8110 0.74 0.106198
Target:  5'- cGCCGCGCUC-GCCGA--GGCGCCGc -3'
miRNA:   3'- cCGGCGUGAGuCGGCUcgUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 24620 0.73 0.136316
Target:  5'- cGGCCGCACgcgUGGUCGAaCAGCugCGu -3'
miRNA:   3'- -CCGGCGUGa--GUCGGCUcGUCGugGCu -5'
28132 5' -60.2 NC_005887.1 + 6911 0.73 0.137823
Target:  5'- uGGCCGCcgagcgaaucccgcaACUCGGCaUGGGCcGCGCCGu -3'
miRNA:   3'- -CCGGCG---------------UGAGUCG-GCUCGuCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 25024 0.72 0.144003
Target:  5'- cGGCCGCcgGC-CAGCCG-GUAGCGCaGAa -3'
miRNA:   3'- -CCGGCG--UGaGUCGGCuCGUCGUGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.