miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 15091 0.66 0.402015
Target:  5'- cGcCCGCAUucuucagcgcgagcaUCAGCuCGGGCGGCACg-- -3'
miRNA:   3'- cC-GGCGUG---------------AGUCG-GCUCGUCGUGgcu -5'
28132 5' -60.2 NC_005887.1 + 2063 0.68 0.285179
Target:  5'- uGCCGCGCUCguaguAGCCGGcCGGCAgguugUCGAu -3'
miRNA:   3'- cCGGCGUGAG-----UCGGCUcGUCGU-----GGCU- -5'
28132 5' -60.2 NC_005887.1 + 23454 0.68 0.278144
Target:  5'- cGGCUGCcaGCggCAGCgCGAGCAGCAa--- -3'
miRNA:   3'- -CCGGCG--UGa-GUCG-GCUCGUCGUggcu -5'
28132 5' -60.2 NC_005887.1 + 24045 0.76 0.082416
Target:  5'- cGCCGC-CUCGcGCuCGAGCAGUggGCCGAg -3'
miRNA:   3'- cCGGCGuGAGU-CG-GCUCGUCG--UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 16472 0.66 0.371835
Target:  5'- cGGCCGCgugaGCUucCGGCCG-GCGGCcgucUCGAc -3'
miRNA:   3'- -CCGGCG----UGA--GUCGGCuCGUCGu---GGCU- -5'
28132 5' -60.2 NC_005887.1 + 28401 0.66 0.371835
Target:  5'- uGCCGCGC-CGGC---GCAGaCGCCGAc -3'
miRNA:   3'- cCGGCGUGaGUCGgcuCGUC-GUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 32823 0.67 0.346517
Target:  5'- cGGCUGCAUggcgCGcGCCG-GCGcGCACgCGAg -3'
miRNA:   3'- -CCGGCGUGa---GU-CGGCuCGU-CGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 23369 0.67 0.344055
Target:  5'- gGGCCGCAgugcggcguuguucUUCGGCgCGGGCugcGGCAaCCGc -3'
miRNA:   3'- -CCGGCGU--------------GAGUCG-GCUCG---UCGU-GGCu -5'
28132 5' -60.2 NC_005887.1 + 11612 0.67 0.31472
Target:  5'- cGCCGCGCgcugCGcGCCGAGCuGCugaucagcuugACCGc -3'
miRNA:   3'- cCGGCGUGa---GU-CGGCUCGuCG-----------UGGCu -5'
28132 5' -60.2 NC_005887.1 + 769 0.68 0.299668
Target:  5'- aGCUGguuCACgUCGG-CGAGCAGCAUCGAc -3'
miRNA:   3'- cCGGC---GUG-AGUCgGCUCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11878 0.67 0.310145
Target:  5'- aGGCCGCcgccugccuuagcguACgaaccgacgCcGCCGAGCAGCgaggacgccGCCGAg -3'
miRNA:   3'- -CCGGCG---------------UGa--------GuCGGCUCGUCG---------UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 28286 0.67 0.322458
Target:  5'- cGCgCGCuGCUCAaaaccGCCGAgacgcGCGGCGCUGAu -3'
miRNA:   3'- cCG-GCG-UGAGU-----CGGCU-----CGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11164 0.66 0.398384
Target:  5'- cGCgCGCAC-CAGCCGAuGCGcCACgCGGa -3'
miRNA:   3'- cCG-GCGUGaGUCGGCU-CGUcGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 1864 0.67 0.307124
Target:  5'- cGGCgGCACgUCcuUCGGGUAGCgGCCGAc -3'
miRNA:   3'- -CCGgCGUG-AGucGGCUCGUCG-UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 36363 0.66 0.388509
Target:  5'- cGCCGCGCagaUCGGCCaaccggacgagucGAGCgAGUACgCGGa -3'
miRNA:   3'- cCGGCGUG---AGUCGG-------------CUCG-UCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 13623 0.67 0.330337
Target:  5'- cGGCC-UGCUCGGgCG-GCAGCgcaucGCCGAu -3'
miRNA:   3'- -CCGGcGUGAGUCgGCuCGUCG-----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 25137 0.67 0.307124
Target:  5'- cGGCCuCACcuucacccuuUCGGCC-AGCGGCACUGc -3'
miRNA:   3'- -CCGGcGUG----------AGUCGGcUCGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 8781 0.68 0.280941
Target:  5'- uGGCCGCgacgaagcGCUUAccgccgcggcggaucGCCGGGCccuGCACCGu -3'
miRNA:   3'- -CCGGCG--------UGAGU---------------CGGCUCGu--CGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 26143 0.66 0.377921
Target:  5'- cGCCGCGCg-GGCCGcugacgcgcugaccAGgAGCACCa- -3'
miRNA:   3'- cCGGCGUGagUCGGC--------------UCgUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 14751 0.66 0.365817
Target:  5'- cGCCGCgacgagcccgaucguGCggggCAGCgucgaaccggcgaCGGGCAGCACCGc -3'
miRNA:   3'- cCGGCG---------------UGa---GUCG-------------GCUCGUCGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.