miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 5560 0.71 0.178842
Target:  5'- cGGCCgGUGCUgCGGCCGGuGCuGCGCCa- -3'
miRNA:   3'- -CCGG-CGUGA-GUCGGCU-CGuCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 6911 0.73 0.137823
Target:  5'- uGGCCGCcgagcgaaucccgcaACUCGGCaUGGGCcGCGCCGu -3'
miRNA:   3'- -CCGGCG---------------UGAGUCG-GCUCGuCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 7221 0.67 0.330337
Target:  5'- aGG-CGCugUCGGCguCGGGC-GCAUCGAc -3'
miRNA:   3'- -CCgGCGugAGUCG--GCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 8110 0.74 0.106198
Target:  5'- cGCCGCGCUC-GCCGA--GGCGCCGc -3'
miRNA:   3'- cCGGCGUGAGuCGGCUcgUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 8559 0.68 0.264491
Target:  5'- aGGgCGCAU---GCCGAagGCAGCACCGc -3'
miRNA:   3'- -CCgGCGUGaguCGGCU--CGUCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 8560 0.69 0.25591
Target:  5'- cGCCGUuacgcgACUCGagccacgugucgucGCCGAGCGguuGCGCCGGg -3'
miRNA:   3'- cCGGCG------UGAGU--------------CGGCUCGU---CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 8781 0.68 0.280941
Target:  5'- uGGCCGCgacgaagcGCUUAccgccgcggcggaucGCCGGGCccuGCACCGu -3'
miRNA:   3'- -CCGGCG--------UGAGU---------------CGGCUCGu--CGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 10030 0.71 0.169487
Target:  5'- cGGCCGCGCU-GGCaCGAacaGCGGCAUCa- -3'
miRNA:   3'- -CCGGCGUGAgUCG-GCU---CGUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 10080 0.7 0.220962
Target:  5'- aGCCGCAUUCcGUCGugugGGCGGCccgcGCCGAc -3'
miRNA:   3'- cCGGCGUGAGuCGGC----UCGUCG----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 10184 0.68 0.271248
Target:  5'- cGUCGUACgugCAGCCGAuCAGCugGCCGu -3'
miRNA:   3'- cCGGCGUGa--GUCGGCUcGUCG--UGGCu -5'
28132 5' -60.2 NC_005887.1 + 10973 0.72 0.147992
Target:  5'- cGGCCgacgucaucuGCGC-CGGCUGcAGguGCACCGAc -3'
miRNA:   3'- -CCGG----------CGUGaGUCGGC-UCguCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11164 0.66 0.398384
Target:  5'- cGCgCGCAC-CAGCCGAuGCGcCACgCGGa -3'
miRNA:   3'- cCG-GCGUGaGUCGGCU-CGUcGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 11309 0.67 0.307124
Target:  5'- cGGCCG-GCUCGGC--AGCgAGCGCCGc -3'
miRNA:   3'- -CCGGCgUGAGUCGgcUCG-UCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 11376 0.71 0.164976
Target:  5'- uGCgGCGCUCGcuGCCGAGCcggccGCugCGAg -3'
miRNA:   3'- cCGgCGUGAGU--CGGCUCGu----CGugGCU- -5'
28132 5' -60.2 NC_005887.1 + 11487 0.74 0.105902
Target:  5'- cGGCCuguuGCGCUCAGaCGAugccuugGCGGCGCCGGc -3'
miRNA:   3'- -CCGG----CGUGAGUCgGCU-------CGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11612 0.67 0.31472
Target:  5'- cGCCGCGCgcugCGcGCCGAGCuGCugaucagcuugACCGc -3'
miRNA:   3'- cCGGCGUGa---GU-CGGCUCGuCG-----------UGGCu -5'
28132 5' -60.2 NC_005887.1 + 11865 0.67 0.321678
Target:  5'- -uUCGaCGCUCGGCgGucuuucgucguucGGCAGCGCCGGc -3'
miRNA:   3'- ccGGC-GUGAGUCGgC-------------UCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 11878 0.67 0.310145
Target:  5'- aGGCCGCcgccugccuuagcguACgaaccgacgCcGCCGAGCAGCgaggacgccGCCGAg -3'
miRNA:   3'- -CCGGCG---------------UGa--------GuCGGCUCGUCG---------UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 12111 0.67 0.306372
Target:  5'- uGGCCGCGCagaAGCgccaggaCGAGCAGgcCGCCGu -3'
miRNA:   3'- -CCGGCGUGag-UCG-------GCUCGUC--GUGGCu -5'
28132 5' -60.2 NC_005887.1 + 12158 0.69 0.25787
Target:  5'- cGGCCaGCACgUCGGugaccugaCCGAGCGacGUGCCGAc -3'
miRNA:   3'- -CCGG-CGUG-AGUC--------GGCUCGU--CGUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.