miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 42047 0.7 0.198933
Target:  5'- aGGCCGUGCUgcugaUAGgCGAGC-GCGCCGc -3'
miRNA:   3'- -CCGGCGUGA-----GUCgGCUCGuCGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 41917 0.67 0.322458
Target:  5'- -cCCGCACgu-GCUGAGCGGCucgcaGCUGAg -3'
miRNA:   3'- ccGGCGUGaguCGGCUCGUCG-----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 41671 0.7 0.204254
Target:  5'- gGGCCGCGC-CGGCCGccgcaccugGGCcGCcgcugGCCGAc -3'
miRNA:   3'- -CCGGCGUGaGUCGGC---------UCGuCG-----UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 41602 0.66 0.38055
Target:  5'- cGGCCcagGUGCggCGGCCGGcGCGGC-CCGu -3'
miRNA:   3'- -CCGG---CGUGa-GUCGGCU-CGUCGuGGCu -5'
28132 5' -60.2 NC_005887.1 + 41551 0.69 0.232737
Target:  5'- cGGCgCGCACgcgaAGUC-AGcCAGCGCCGAg -3'
miRNA:   3'- -CCG-GCGUGag--UCGGcUC-GUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 41517 0.68 0.278144
Target:  5'- -cUCGCGCggCGuGCCGAGCAGCGCa-- -3'
miRNA:   3'- ccGGCGUGa-GU-CGGCUCGUCGUGgcu -5'
28132 5' -60.2 NC_005887.1 + 41025 0.72 0.160572
Target:  5'- aGGcCCGCGCcgaagCGGUCGAGCAuGCGCuCGGc -3'
miRNA:   3'- -CC-GGCGUGa----GUCGGCUCGU-CGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 40771 0.66 0.363257
Target:  5'- cGCCGCGCgccGCCGAGcCGGCgguCGAg -3'
miRNA:   3'- cCGGCGUGaguCGGCUC-GUCGug-GCU- -5'
28132 5' -60.2 NC_005887.1 + 40690 0.69 0.245036
Target:  5'- uGGCgCGCGCgcaCGGCUG-GCAGgaGCCGAu -3'
miRNA:   3'- -CCG-GCGUGa--GUCGGCuCGUCg-UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40641 0.7 0.204254
Target:  5'- gGGuuGUACUU-GCuCGAGC-GCGCCGAg -3'
miRNA:   3'- -CCggCGUGAGuCG-GCUCGuCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40623 0.8 0.038714
Target:  5'- uGGCCGCACaUCGGCaagacaggcacugaCGAGCGcGCGCCGAu -3'
miRNA:   3'- -CCGGCGUG-AGUCG--------------GCUCGU-CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40413 0.69 0.238206
Target:  5'- cGGCCGCGCUCgacGGCC-AGUccauuucGGCGgCGAa -3'
miRNA:   3'- -CCGGCGUGAG---UCGGcUCG-------UCGUgGCU- -5'
28132 5' -60.2 NC_005887.1 + 40365 0.68 0.271248
Target:  5'- uGUCGUcgaGCUCGaacgaaUCGAGCGGCACCGAc -3'
miRNA:   3'- cCGGCG---UGAGUc-----GGCUCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 40154 0.68 0.285179
Target:  5'- cGCCGCGCUC-GCCGcGUgugAGCugCGc -3'
miRNA:   3'- cCGGCGUGAGuCGGCuCG---UCGugGCu -5'
28132 5' -60.2 NC_005887.1 + 40092 0.69 0.232737
Target:  5'- cGGCCGC-CUCgAGCCGcGCcaugaugcGCACCGc -3'
miRNA:   3'- -CCGGCGuGAG-UCGGCuCGu-------CGUGGCu -5'
28132 5' -60.2 NC_005887.1 + 37297 0.71 0.182223
Target:  5'- cGUCGCGCcagacgguuucgauUCGGUCGucgcAGCAGCGCCGGc -3'
miRNA:   3'- cCGGCGUG--------------AGUCGGC----UCGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 36363 0.66 0.388509
Target:  5'- cGCCGCGCagaUCGGCCaaccggacgagucGAGCgAGUACgCGGa -3'
miRNA:   3'- cCGGCGUG---AGUCGG-------------CUCG-UCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 35821 0.69 0.243157
Target:  5'- aGCCGCGCgugaacgagaAGCCGAGCGagugggccacgaccGCgACCGAg -3'
miRNA:   3'- cCGGCGUGag--------UCGGCUCGU--------------CG-UGGCU- -5'
28132 5' -60.2 NC_005887.1 + 35616 0.69 0.238821
Target:  5'- cGCCGCACau-GUCGAGCagaccaucGGCGCUGAc -3'
miRNA:   3'- cCGGCGUGaguCGGCUCG--------UCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 35330 0.66 0.388509
Target:  5'- uGCCGCGCgccgcggCGGCCGGccacgagcuucacGCccGGCACCa- -3'
miRNA:   3'- cCGGCGUGa------GUCGGCU-------------CG--UCGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.