miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 12902 0.67 0.723563
Target:  5'- aUCGgcACGGCGAGCC-AGCA-CGccgguuUCGCGa -3'
miRNA:   3'- -AGU--UGCCGUUCGGcUUGUaGC------AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 7892 0.67 0.723563
Target:  5'- cCGACGaGCAGGCCGGcgacgaucugcaguaACGgacugacacauggCGUCGCa -3'
miRNA:   3'- aGUUGC-CGUUCGGCU---------------UGUa------------GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 33445 0.67 0.723563
Target:  5'- cUCGACGaGCuucgcguAGCCGAugAU-GUCGUGc -3'
miRNA:   3'- -AGUUGC-CGu------UCGGCUugUAgCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 33872 0.67 0.712554
Target:  5'- --uGCGGC-AGCCGAcaGCGcucCGUCGCc -3'
miRNA:   3'- aguUGCCGuUCGGCU--UGUa--GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 30551 0.67 0.712554
Target:  5'- gCggUGcGCAAcGCaCGGGCcgCGUCGCGc -3'
miRNA:   3'- aGuuGC-CGUU-CG-GCUUGuaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 41517 0.67 0.712554
Target:  5'- cUCGcGCGGCGuGCCGAGCAg---CGCa -3'
miRNA:   3'- -AGU-UGCCGUuCGGCUUGUagcaGCGc -5'
28133 3' -52.8 NC_005887.1 + 11041 0.67 0.712554
Target:  5'- cUCGACGaGCGuccAGCCGAucuGCGUgGaCGCGc -3'
miRNA:   3'- -AGUUGC-CGU---UCGGCU---UGUAgCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 41670 0.67 0.712554
Target:  5'- aCGuUGGCGAGCCGGACGaaGguaGCGa -3'
miRNA:   3'- aGUuGCCGUUCGGCUUGUagCag-CGC- -5'
28133 3' -52.8 NC_005887.1 + 34851 0.67 0.712554
Target:  5'- uUCGACGGCAA-CCG-AC-UUGaUCGCGg -3'
miRNA:   3'- -AGUUGCCGUUcGGCuUGuAGC-AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 5813 0.67 0.712554
Target:  5'- aCGGCGGCGaucgAGUCGGcGCGg-GUCGCGa -3'
miRNA:   3'- aGUUGCCGU----UCGGCU-UGUagCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 6335 0.67 0.701462
Target:  5'- aCGGCGGCGuucuGCCGAACAagagcUCGacUGCa -3'
miRNA:   3'- aGUUGCCGUu---CGGCUUGU-----AGCa-GCGc -5'
28133 3' -52.8 NC_005887.1 + 7511 0.67 0.701462
Target:  5'- cUCGGCGGCAcgaccCCGAGCGUCa-CGCu -3'
miRNA:   3'- -AGUUGCCGUuc---GGCUUGUAGcaGCGc -5'
28133 3' -52.8 NC_005887.1 + 7518 0.67 0.701462
Target:  5'- -gAACGGCAuGCCGAuCA-CGaCGCGc -3'
miRNA:   3'- agUUGCCGUuCGGCUuGUaGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 40935 0.67 0.69812
Target:  5'- cCGAguuCGGCAAcGCCGAGCGcaugcucgaccgcuUCGgCGCGg -3'
miRNA:   3'- aGUU---GCCGUU-CGGCUUGU--------------AGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 15739 0.68 0.690298
Target:  5'- gCGGCGGUGAGCugguCGAGC-UCGgCGCGc -3'
miRNA:   3'- aGUUGCCGUUCG----GCUUGuAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 25515 0.68 0.690298
Target:  5'- gCGGCGGguGGCgGcauaAUCGUCGCc -3'
miRNA:   3'- aGUUGCCguUCGgCuug-UAGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 14085 0.68 0.690298
Target:  5'- cCGGCGGCGcGCCGGcgguuGCGgaggCG-CGCGg -3'
miRNA:   3'- aGUUGCCGUuCGGCU-----UGUa---GCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 9561 0.68 0.690298
Target:  5'- uUCGGCaGCAugccggggucGGCCGggUcguUCGUCGCc -3'
miRNA:   3'- -AGUUGcCGU----------UCGGCuuGu--AGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 27136 0.68 0.689178
Target:  5'- cUCGuCGGCGaucacgcGGCCGAACGgccaCGggCGCGg -3'
miRNA:   3'- -AGUuGCCGU-------UCGGCUUGUa---GCa-GCGC- -5'
28133 3' -52.8 NC_005887.1 + 40358 0.68 0.679075
Target:  5'- gUCGagcGCGGCcguGCCGcuCGUCGcgCGCGa -3'
miRNA:   3'- -AGU---UGCCGuu-CGGCuuGUAGCa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.