miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 17250 0.66 0.772761
Target:  5'- aCGGCGGCGucaauaagaucguGCCGGGCGagaCGUCGgGc -3'
miRNA:   3'- aGUUGCCGUu------------CGGCUUGUa--GCAGCgC- -5'
28133 3' -52.8 NC_005887.1 + 2559 0.66 0.766503
Target:  5'- --cACGaGCAGGCCGGGC-UCGcCGuCGa -3'
miRNA:   3'- aguUGC-CGUUCGGCUUGuAGCaGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 34804 0.66 0.766503
Target:  5'- uUCGACGGCuucgaAGGCaacauguACAUCGcCGCGc -3'
miRNA:   3'- -AGUUGCCG-----UUCGgcu----UGUAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 19322 0.66 0.766503
Target:  5'- gUCGGCGGCAccaagcgguacaGGUgGAGCAUCGaacccggUGCa -3'
miRNA:   3'- -AGUUGCCGU------------UCGgCUUGUAGCa------GCGc -5'
28133 3' -52.8 NC_005887.1 + 25960 0.67 0.755957
Target:  5'- ---cCGGCAGacGCCGAGCAUCuUCGaCa -3'
miRNA:   3'- aguuGCCGUU--CGGCUUGUAGcAGC-Gc -5'
28133 3' -52.8 NC_005887.1 + 41988 0.67 0.755956
Target:  5'- cUCAGCuGCGAGCCGcucAGCA-CGU-GCGg -3'
miRNA:   3'- -AGUUGcCGUUCGGC---UUGUaGCAgCGC- -5'
28133 3' -52.8 NC_005887.1 + 19822 0.67 0.755956
Target:  5'- uUCGuUGGCAGGuaGAGCGacagCGUCGUGc -3'
miRNA:   3'- -AGUuGCCGUUCggCUUGUa---GCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 40995 0.67 0.755956
Target:  5'- ---uCGGCGuuGCCGAAC-UCGgugCGCGc -3'
miRNA:   3'- aguuGCCGUu-CGGCUUGuAGCa--GCGC- -5'
28133 3' -52.8 NC_005887.1 + 4956 0.67 0.755956
Target:  5'- gCGcCGGCccucGgCGAcCAUCGUCGCGa -3'
miRNA:   3'- aGUuGCCGuu--CgGCUuGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 30152 0.67 0.745276
Target:  5'- gUCGGCGcCGAuGCCG-GCGUCGaagUCGCGg -3'
miRNA:   3'- -AGUUGCcGUU-CGGCuUGUAGC---AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 39910 0.67 0.745276
Target:  5'- gCAuACGGUgcgcgcagaucGAGCCGGGCG-CGUCGaCGa -3'
miRNA:   3'- aGU-UGCCG-----------UUCGGCUUGUaGCAGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 41326 0.67 0.745276
Target:  5'- gUCGACGGCGccauugccgacGCCGAGCAggugCGUgUGCu -3'
miRNA:   3'- -AGUUGCCGUu----------CGGCUUGUa---GCA-GCGc -5'
28133 3' -52.8 NC_005887.1 + 6697 0.67 0.745276
Target:  5'- aCAACGaGCcauGCCGAgGCGUUGUCGg- -3'
miRNA:   3'- aGUUGC-CGuu-CGGCU-UGUAGCAGCgc -5'
28133 3' -52.8 NC_005887.1 + 28380 0.67 0.745276
Target:  5'- gUCGACGGCuucgcggcuGUCGAucacgcGCA-CGUCGCa -3'
miRNA:   3'- -AGUUGCCGuu-------CGGCU------UGUaGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 36804 0.67 0.745276
Target:  5'- --cGCGGCAucGGCaCGAuuaACAUCGuuUCGCa -3'
miRNA:   3'- aguUGCCGU--UCG-GCU---UGUAGC--AGCGc -5'
28133 3' -52.8 NC_005887.1 + 37014 0.67 0.742047
Target:  5'- aCGACGGagUAAGCCGccaugaaauugaccAACAUCGacCGCGa -3'
miRNA:   3'- aGUUGCC--GUUCGGC--------------UUGUAGCa-GCGC- -5'
28133 3' -52.8 NC_005887.1 + 25009 0.67 0.734474
Target:  5'- -aGGCGGCccGCgCGcACcgCGUCGCGa -3'
miRNA:   3'- agUUGCCGuuCG-GCuUGuaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 23568 0.67 0.734474
Target:  5'- gUCAGC-GC-GGCCGAACA-CGUCgGCa -3'
miRNA:   3'- -AGUUGcCGuUCGGCUUGUaGCAG-CGc -5'
28133 3' -52.8 NC_005887.1 + 1643 0.67 0.734474
Target:  5'- -gGACGGCAcgagcgucgaAGCCGAAauggucuuCAUCG-CGCu -3'
miRNA:   3'- agUUGCCGU----------UCGGCUU--------GUAGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 7892 0.67 0.723563
Target:  5'- cCGACGaGCAGGCCGGcgacgaucugcaguaACGgacugacacauggCGUCGCa -3'
miRNA:   3'- aGUUGC-CGUUCGGCU---------------UGUa------------GCAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.