miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 17250 0.66 0.772761
Target:  5'- aCGGCGGCGucaauaagaucguGCCGGGCGagaCGUCGgGc -3'
miRNA:   3'- aGUUGCCGUu------------CGGCUUGUa--GCAGCgC- -5'
28133 3' -52.8 NC_005887.1 + 35472 0.66 0.776902
Target:  5'- cUCGugGGCGaaGGCCGuGCG-CGggCGCa -3'
miRNA:   3'- -AGUugCCGU--UCGGCuUGUaGCa-GCGc -5'
28133 3' -52.8 NC_005887.1 + 32047 0.66 0.805134
Target:  5'- aCAGCGGCAuuGGCCGAGaagggagUGCGu -3'
miRNA:   3'- aGUUGCCGU--UCGGCUUguagca-GCGC- -5'
28133 3' -52.8 NC_005887.1 + 41509 0.66 0.787142
Target:  5'- -gAACGGCAAGUCGAcgguGC-UCGgcaagaucCGCGa -3'
miRNA:   3'- agUUGCCGUUCGGCU----UGuAGCa-------GCGC- -5'
28133 3' -52.8 NC_005887.1 + 28380 0.67 0.745276
Target:  5'- gUCGACGGCuucgcggcuGUCGAucacgcGCA-CGUCGCa -3'
miRNA:   3'- -AGUUGCCGuu-------CGGCU------UGUaGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 40935 0.67 0.69812
Target:  5'- cCGAguuCGGCAAcGCCGAGCGcaugcucgaccgcuUCGgCGCGg -3'
miRNA:   3'- aGUU---GCCGUU-CGGCUUGU--------------AGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 7511 0.67 0.701462
Target:  5'- cUCGGCGGCAcgaccCCGAGCGUCa-CGCu -3'
miRNA:   3'- -AGUUGCCGUuc---GGCUUGUAGcaGCGc -5'
28133 3' -52.8 NC_005887.1 + 5813 0.67 0.712554
Target:  5'- aCGGCGGCGaucgAGUCGGcGCGg-GUCGCGa -3'
miRNA:   3'- aGUUGCCGU----UCGGCU-UGUagCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 34851 0.67 0.712554
Target:  5'- uUCGACGGCAA-CCG-AC-UUGaUCGCGg -3'
miRNA:   3'- -AGUUGCCGUUcGGCuUGuAGC-AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 25960 0.67 0.755957
Target:  5'- ---cCGGCAGacGCCGAGCAUCuUCGaCa -3'
miRNA:   3'- aguuGCCGUU--CGGCUUGUAGcAGC-Gc -5'
28133 3' -52.8 NC_005887.1 + 41670 0.67 0.712554
Target:  5'- aCGuUGGCGAGCCGGACGaaGguaGCGa -3'
miRNA:   3'- aGUuGCCGUUCGGCUUGUagCag-CGC- -5'
28133 3' -52.8 NC_005887.1 + 6335 0.67 0.701462
Target:  5'- aCGGCGGCGuucuGCCGAACAagagcUCGacUGCa -3'
miRNA:   3'- aGUUGCCGUu---CGGCUUGU-----AGCa-GCGc -5'
28133 3' -52.8 NC_005887.1 + 33872 0.67 0.712554
Target:  5'- --uGCGGC-AGCCGAcaGCGcucCGUCGCc -3'
miRNA:   3'- aguUGCCGuUCGGCU--UGUa--GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 30152 0.67 0.745276
Target:  5'- gUCGGCGcCGAuGCCG-GCGUCGaagUCGCGg -3'
miRNA:   3'- -AGUUGCcGUU-CGGCuUGUAGC---AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 12902 0.67 0.723563
Target:  5'- aUCGgcACGGCGAGCC-AGCA-CGccgguuUCGCGa -3'
miRNA:   3'- -AGU--UGCCGUUCGGcUUGUaGC------AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 7892 0.67 0.723563
Target:  5'- cCGACGaGCAGGCCGGcgacgaucugcaguaACGgacugacacauggCGUCGCa -3'
miRNA:   3'- aGUUGC-CGUUCGGCU---------------UGUa------------GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 33445 0.67 0.723563
Target:  5'- cUCGACGaGCuucgcguAGCCGAugAU-GUCGUGc -3'
miRNA:   3'- -AGUUGC-CGu------UCGGCUugUAgCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 39910 0.67 0.745276
Target:  5'- gCAuACGGUgcgcgcagaucGAGCCGGGCG-CGUCGaCGa -3'
miRNA:   3'- aGU-UGCCG-----------UUCGGCUUGUaGCAGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 1643 0.67 0.734474
Target:  5'- -gGACGGCAcgagcgucgaAGCCGAAauggucuuCAUCG-CGCu -3'
miRNA:   3'- agUUGCCGU----------UCGGCUU--------GUAGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 8407 0.67 0.723563
Target:  5'- -aGGCGcGUggGCCGAGCAcgaccaggcuaUCGcCGCa -3'
miRNA:   3'- agUUGC-CGuuCGGCUUGU-----------AGCaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.