miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 37818 0.73 0.370769
Target:  5'- aCGACGGCAAGuuGGGCGggcUCGUggaacuucuccugCGCGa -3'
miRNA:   3'- aGUUGCCGUUCggCUUGU---AGCA-------------GCGC- -5'
28133 3' -52.8 NC_005887.1 + 18552 0.73 0.371669
Target:  5'- -gGGCGGCGGcGCCGGcuucgcgggcgACAugcUCGUCGCGg -3'
miRNA:   3'- agUUGCCGUU-CGGCU-----------UGU---AGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 24614 0.73 0.389974
Target:  5'- aUCAugGGCGcccGGCCGAAgGUgCGgccgCGCGu -3'
miRNA:   3'- -AGUugCCGU---UCGGCUUgUA-GCa---GCGC- -5'
28133 3' -52.8 NC_005887.1 + 29762 0.73 0.399345
Target:  5'- ---cCGGCGAGCUGAucgcgaggaucGCcgCGUCGCGc -3'
miRNA:   3'- aguuGCCGUUCGGCU-----------UGuaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 36128 0.73 0.408858
Target:  5'- aUCGACGGCGuGCgCGAGCG-CGUCGa- -3'
miRNA:   3'- -AGUUGCCGUuCG-GCUUGUaGCAGCgc -5'
28133 3' -52.8 NC_005887.1 + 8748 0.73 0.408858
Target:  5'- uUCGACgaaacagucguGGCuccuGCCGuuCAUCGUCGCGg -3'
miRNA:   3'- -AGUUG-----------CCGuu--CGGCuuGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 4020 0.72 0.418512
Target:  5'- gCAACGGCGGGUCGAcgagcuucuGCG-CGcCGCGg -3'
miRNA:   3'- aGUUGCCGUUCGGCU---------UGUaGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 13411 0.72 0.418512
Target:  5'- gUCGGCGGCAAGCCGcugcugacGACGagCGgCGCa -3'
miRNA:   3'- -AGUUGCCGUUCGGC--------UUGUa-GCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 21580 0.72 0.428303
Target:  5'- ---cCGGCA-GCCG-GCGUCGUUGCGc -3'
miRNA:   3'- aguuGCCGUuCGGCuUGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 23998 0.72 0.428303
Target:  5'- -aGACGGCcgcgAGGCCG-ACGUCaUCGCGa -3'
miRNA:   3'- agUUGCCG----UUCGGCuUGUAGcAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 8714 0.72 0.428303
Target:  5'- gCGGCGGUAAGC---GCuUCGUCGCGg -3'
miRNA:   3'- aGUUGCCGUUCGgcuUGuAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 27983 0.72 0.448284
Target:  5'- cCGcCGGCucgGGCCGAAUcgCGUCGuCGg -3'
miRNA:   3'- aGUuGCCGu--UCGGCUUGuaGCAGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 34710 0.72 0.458465
Target:  5'- ---cCGGCAAGCCGGcgcgccuCGUCGaCGCGa -3'
miRNA:   3'- aguuGCCGUUCGGCUu------GUAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 30203 0.72 0.458466
Target:  5'- cUCGcCGGCcAGCCacGCcgCGUCGCGg -3'
miRNA:   3'- -AGUuGCCGuUCGGcuUGuaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 2223 0.72 0.458466
Target:  5'- gCGGCuGGCGcauccGGUCGGAaGUCGUCGCGa -3'
miRNA:   3'- aGUUG-CCGU-----UCGGCUUgUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 40959 0.71 0.468769
Target:  5'- uUCGGCGGCucGUCGu-CAcCGUCGCGu -3'
miRNA:   3'- -AGUUGCCGuuCGGCuuGUaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 9505 0.71 0.46877
Target:  5'- ---cCGGCAugcuGCCGAACAcCGUCGUc -3'
miRNA:   3'- aguuGCCGUu---CGGCUUGUaGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 34694 0.71 0.46877
Target:  5'- gCAGCaGCGGGCgGc-CGUCGUCGCGc -3'
miRNA:   3'- aGUUGcCGUUCGgCuuGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 16242 0.71 0.479191
Target:  5'- cCGGcCGGCGAGCgcaCGGGCAcCGUCGCc -3'
miRNA:   3'- aGUU-GCCGUUCG---GCUUGUaGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 12370 0.71 0.479191
Target:  5'- ---gUGGCAGGCCGAGCAgcacCG-CGCa -3'
miRNA:   3'- aguuGCCGUUCGGCUUGUa---GCaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.