miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 13720 1.1 0.001101
Target:  5'- aUCAACGGCAAGCCGAACAUCGUCGCGa -3'
miRNA:   3'- -AGUUGCCGUUCGGCUUGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 5215 0.82 0.116066
Target:  5'- aUCAGCGGCGcGCCG-ACGUCGggcagCGCGg -3'
miRNA:   3'- -AGUUGCCGUuCGGCuUGUAGCa----GCGC- -5'
28133 3' -52.8 NC_005887.1 + 29511 0.79 0.177941
Target:  5'- cUCGACGGCGGGCgcguuguaGAACAgcaCGUCGCGc -3'
miRNA:   3'- -AGUUGCCGUUCGg-------CUUGUa--GCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 28279 0.77 0.240491
Target:  5'- aUCAuCGGCAcGCCGAgcgcgcgcaGCGUCGUgGCGa -3'
miRNA:   3'- -AGUuGCCGUuCGGCU---------UGUAGCAgCGC- -5'
28133 3' -52.8 NC_005887.1 + 7449 0.76 0.260476
Target:  5'- gUCGuCGGCGAGCUGAacgcgGCGUUGUCGuCGg -3'
miRNA:   3'- -AGUuGCCGUUCGGCU-----UGUAGCAGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 17939 0.76 0.267432
Target:  5'- gCGGCGGaCAGGuuCCGGgcccACGUCGUCGCGa -3'
miRNA:   3'- aGUUGCC-GUUC--GGCU----UGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 29878 0.75 0.289202
Target:  5'- --uGCGGCAGGCCGAGCGUaCGgCGUu -3'
miRNA:   3'- aguUGCCGUUCGGCUUGUA-GCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 14705 0.75 0.296761
Target:  5'- gCGGCgGGCGGGCCGGGCGcggCGaUCGCGc -3'
miRNA:   3'- aGUUG-CCGUUCGGCUUGUa--GC-AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 35197 0.75 0.304473
Target:  5'- cCAACGGCGGGgCGAu--UCGUUGCGc -3'
miRNA:   3'- aGUUGCCGUUCgGCUuguAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 33943 0.75 0.312338
Target:  5'- cCGACGGCGcucGgCGAGCA-CGUCGCGu -3'
miRNA:   3'- aGUUGCCGUu--CgGCUUGUaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 4313 0.75 0.312338
Target:  5'- uUCAgacuGCGuGC-GGCCGAGCGUCGgCGCGa -3'
miRNA:   3'- -AGU----UGC-CGuUCGGCUUGUAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 17414 0.75 0.312338
Target:  5'- gUCGGCGGCAuGGCgaaGAACAUCG-CGCu -3'
miRNA:   3'- -AGUUGCCGU-UCGg--CUUGUAGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 16502 0.75 0.312338
Target:  5'- gUCGGCGaugucGCAGGCCGAucGCGUCGcCGCc -3'
miRNA:   3'- -AGUUGC-----CGUUCGGCU--UGUAGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 2973 0.74 0.328528
Target:  5'- gCGGCGGCGucguucgcggcGGCCGAcgugucCGUCGUCGCc -3'
miRNA:   3'- aGUUGCCGU-----------UCGGCUu-----GUAGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 40323 0.74 0.336852
Target:  5'- cCAGCGGC-AGCaCGAACAUauugccgaagcCGUCGCu -3'
miRNA:   3'- aGUUGCCGuUCG-GCUUGUA-----------GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 10374 0.74 0.336853
Target:  5'- aCAACGGCGuGCCGA-CGUCGacuaUCGCc -3'
miRNA:   3'- aGUUGCCGUuCGGCUuGUAGC----AGCGc -5'
28133 3' -52.8 NC_005887.1 + 30701 0.74 0.336853
Target:  5'- cUCGGCGaGCAGGUgcgCGAGCAgcUUGUCGCGc -3'
miRNA:   3'- -AGUUGC-CGUUCG---GCUUGU--AGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 1839 0.74 0.353958
Target:  5'- cCGACGcGCAGGUCGAGCAugUCGaggaucggcuUCGCGa -3'
miRNA:   3'- aGUUGC-CGUUCGGCUUGU--AGC----------AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 14540 0.74 0.353959
Target:  5'- gUCGGCGGCGcGUCGAucgGCAU-GUCGCGc -3'
miRNA:   3'- -AGUUGCCGUuCGGCU---UGUAgCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 2081 0.74 0.353959
Target:  5'- gUCGACGGCAAGCCGGuGCAccCGgacuaUGCGg -3'
miRNA:   3'- -AGUUGCCGUUCGGCU-UGUa-GCa----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.