miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 1643 0.67 0.734474
Target:  5'- -gGACGGCAcgagcgucgaAGCCGAAauggucuuCAUCG-CGCu -3'
miRNA:   3'- agUUGCCGU----------UCGGCUU--------GUAGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 1839 0.74 0.353958
Target:  5'- cCGACGcGCAGGUCGAGCAugUCGaggaucggcuUCGCGa -3'
miRNA:   3'- aGUUGC-CGUUCGGCUUGU--AGC----------AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 1917 0.68 0.667804
Target:  5'- uUCuuuCGGC-AGCCGGGCggCGUCauGCGu -3'
miRNA:   3'- -AGuu-GCCGuUCGGCUUGuaGCAG--CGC- -5'
28133 3' -52.8 NC_005887.1 + 2081 0.74 0.353959
Target:  5'- gUCGACGGCAAGCCGGuGCAccCGgacuaUGCGg -3'
miRNA:   3'- -AGUUGCCGUUCGGCU-UGUa-GCa----GCGC- -5'
28133 3' -52.8 NC_005887.1 + 2223 0.72 0.458466
Target:  5'- gCGGCuGGCGcauccGGUCGGAaGUCGUCGCGa -3'
miRNA:   3'- aGUUG-CCGU-----UCGGCUUgUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 2492 0.7 0.532867
Target:  5'- aUCGACGGCGAGCCcGGCcugcUCGU-GCa -3'
miRNA:   3'- -AGUUGCCGUUCGGcUUGu---AGCAgCGc -5'
28133 3' -52.8 NC_005887.1 + 2514 0.66 0.796212
Target:  5'- gUCGACGGC--GCCGuAGCGcgcgaggugucauUCGUCgGCGc -3'
miRNA:   3'- -AGUUGCCGuuCGGC-UUGU-------------AGCAG-CGC- -5'
28133 3' -52.8 NC_005887.1 + 2559 0.66 0.766503
Target:  5'- --cACGaGCAGGCCGGGC-UCGcCGuCGa -3'
miRNA:   3'- aguUGC-CGUUCGGCUUGuAGCaGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 2704 0.71 0.489725
Target:  5'- -gGGCGGCAagcGGCCGAGCcgCG-CGaCGa -3'
miRNA:   3'- agUUGCCGU---UCGGCUUGuaGCaGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 2973 0.74 0.328528
Target:  5'- gCGGCGGCGucguucgcggcGGCCGAcgugucCGUCGUCGCc -3'
miRNA:   3'- aGUUGCCGU-----------UCGGCUu-----GUAGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 4020 0.72 0.418512
Target:  5'- gCAACGGCGGGUCGAcgagcuucuGCG-CGcCGCGg -3'
miRNA:   3'- aGUUGCCGUUCGGCU---------UGUaGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 4313 0.75 0.312338
Target:  5'- uUCAgacuGCGuGC-GGCCGAGCGUCGgCGCGa -3'
miRNA:   3'- -AGU----UGC-CGuUCGGCUUGUAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 4956 0.67 0.755956
Target:  5'- gCGcCGGCccucGgCGAcCAUCGUCGCGa -3'
miRNA:   3'- aGUuGCCGuu--CgGCUuGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 5215 0.82 0.116066
Target:  5'- aUCAGCGGCGcGCCG-ACGUCGggcagCGCGg -3'
miRNA:   3'- -AGUUGCCGUuCGGCuUGUAGCa----GCGC- -5'
28133 3' -52.8 NC_005887.1 + 5813 0.67 0.712554
Target:  5'- aCGGCGGCGaucgAGUCGGcGCGg-GUCGCGa -3'
miRNA:   3'- aGUUGCCGU----UCGGCU-UGUagCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 6335 0.67 0.701462
Target:  5'- aCGGCGGCGuucuGCCGAACAagagcUCGacUGCa -3'
miRNA:   3'- aGUUGCCGUu---CGGCUUGU-----AGCa-GCGc -5'
28133 3' -52.8 NC_005887.1 + 6528 0.66 0.776902
Target:  5'- -uGACGGCAucgcccccGCCGAAUucacggggcuGUCGcCGCGc -3'
miRNA:   3'- agUUGCCGUu-------CGGCUUG----------UAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 6697 0.67 0.745276
Target:  5'- aCAACGaGCcauGCCGAgGCGUUGUCGg- -3'
miRNA:   3'- aGUUGC-CGuu-CGGCU-UGUAGCAGCgc -5'
28133 3' -52.8 NC_005887.1 + 7338 0.68 0.645167
Target:  5'- -gGGCGGCcgGGGCCGA----UGUCGCGg -3'
miRNA:   3'- agUUGCCG--UUCGGCUuguaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 7449 0.76 0.260476
Target:  5'- gUCGuCGGCGAGCUGAacgcgGCGUUGUCGuCGg -3'
miRNA:   3'- -AGUuGCCGUUCGGCU-----UGUAGCAGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.