miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 41988 0.67 0.755956
Target:  5'- cUCAGCuGCGAGCCGcucAGCA-CGU-GCGg -3'
miRNA:   3'- -AGUUGcCGUUCGGC---UUGUaGCAgCGC- -5'
28133 3' -52.8 NC_005887.1 + 41670 0.67 0.712554
Target:  5'- aCGuUGGCGAGCCGGACGaaGguaGCGa -3'
miRNA:   3'- aGUuGCCGUUCGGCUUGUagCag-CGC- -5'
28133 3' -52.8 NC_005887.1 + 41517 0.67 0.712554
Target:  5'- cUCGcGCGGCGuGCCGAGCAg---CGCa -3'
miRNA:   3'- -AGU-UGCCGUuCGGCUUGUagcaGCGc -5'
28133 3' -52.8 NC_005887.1 + 41509 0.66 0.787142
Target:  5'- -gAACGGCAAGUCGAcgguGC-UCGgcaagaucCGCGa -3'
miRNA:   3'- agUUGCCGUUCGGCU----UGuAGCa-------GCGC- -5'
28133 3' -52.8 NC_005887.1 + 41326 0.67 0.745276
Target:  5'- gUCGACGGCGccauugccgacGCCGAGCAggugCGUgUGCu -3'
miRNA:   3'- -AGUUGCCGUu----------CGGCUUGUa---GCA-GCGc -5'
28133 3' -52.8 NC_005887.1 + 40995 0.67 0.755956
Target:  5'- ---uCGGCGuuGCCGAAC-UCGgugCGCGc -3'
miRNA:   3'- aguuGCCGUu-CGGCUUGuAGCa--GCGC- -5'
28133 3' -52.8 NC_005887.1 + 40959 0.71 0.468769
Target:  5'- uUCGGCGGCucGUCGu-CAcCGUCGCGu -3'
miRNA:   3'- -AGUUGCCGuuCGGCuuGUaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 40935 0.67 0.69812
Target:  5'- cCGAguuCGGCAAcGCCGAGCGcaugcucgaccgcuUCGgCGCGg -3'
miRNA:   3'- aGUU---GCCGUU-CGGCUUGU--------------AGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 40724 0.69 0.62248
Target:  5'- -gGAUGGUGcGGCCGGugAUCGgcgCGCGc -3'
miRNA:   3'- agUUGCCGU-UCGGCUugUAGCa--GCGC- -5'
28133 3' -52.8 NC_005887.1 + 40570 0.68 0.656497
Target:  5'- gUggUGGau-GCCGAACAcgaCGUCGCGc -3'
miRNA:   3'- aGuuGCCguuCGGCUUGUa--GCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 40358 0.68 0.679075
Target:  5'- gUCGagcGCGGCcguGCCGcuCGUCGcgCGCGa -3'
miRNA:   3'- -AGU---UGCCGuu-CGGCuuGUAGCa-GCGC- -5'
28133 3' -52.8 NC_005887.1 + 40323 0.74 0.336852
Target:  5'- cCAGCGGC-AGCaCGAACAUauugccgaagcCGUCGCu -3'
miRNA:   3'- aGUUGCCGuUCG-GCUUGUA-----------GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 39979 0.68 0.656498
Target:  5'- aCAAgGGCGAGacgccguggcCCGAcauGCAggaCGUCGCGg -3'
miRNA:   3'- aGUUgCCGUUC----------GGCU---UGUa--GCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 39920 0.69 0.607746
Target:  5'- cUCAGCGGUGAGCggucgauugaugugCGAcgGCGgccCGUCGCGc -3'
miRNA:   3'- -AGUUGCCGUUCG--------------GCU--UGUa--GCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 39910 0.67 0.745276
Target:  5'- gCAuACGGUgcgcgcagaucGAGCCGGGCG-CGUCGaCGa -3'
miRNA:   3'- aGU-UGCCG-----------UUCGGCUUGUaGCAGC-GC- -5'
28133 3' -52.8 NC_005887.1 + 39088 0.66 0.776902
Target:  5'- cUCcGCaGCAAGCCGc-CGUCGacugCGCGg -3'
miRNA:   3'- -AGuUGcCGUUCGGCuuGUAGCa---GCGC- -5'
28133 3' -52.8 NC_005887.1 + 38133 0.68 0.655366
Target:  5'- aCAaccGCGGCGAugaaaauGCCGGACAUCaGgccgagCGCGa -3'
miRNA:   3'- aGU---UGCCGUU-------CGGCUUGUAG-Ca-----GCGC- -5'
28133 3' -52.8 NC_005887.1 + 37818 0.73 0.370769
Target:  5'- aCGACGGCAAGuuGGGCGggcUCGUggaacuucuccugCGCGa -3'
miRNA:   3'- aGUUGCCGUUCggCUUGU---AGCA-------------GCGC- -5'
28133 3' -52.8 NC_005887.1 + 37014 0.67 0.742047
Target:  5'- aCGACGGagUAAGCCGccaugaaauugaccAACAUCGacCGCGa -3'
miRNA:   3'- aGUUGCC--GUUCGGC--------------UUGUAGCa-GCGC- -5'
28133 3' -52.8 NC_005887.1 + 36994 0.68 0.679075
Target:  5'- cUCGcCGGCGAGCaCGcGCAggcCGUaCGCGa -3'
miRNA:   3'- -AGUuGCCGUUCG-GCuUGUa--GCA-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.