Results 1 - 20 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 30203 | 0.72 | 0.458466 |
Target: 5'- cUCGcCGGCcAGCCacGCcgCGUCGCGg -3' miRNA: 3'- -AGUuGCCGuUCGGcuUGuaGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 14540 | 0.74 | 0.353959 |
Target: 5'- gUCGGCGGCGcGUCGAucgGCAU-GUCGCGc -3' miRNA: 3'- -AGUUGCCGUuCGGCU---UGUAgCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 18552 | 0.73 | 0.371669 |
Target: 5'- -gGGCGGCGGcGCCGGcuucgcgggcgACAugcUCGUCGCGg -3' miRNA: 3'- agUUGCCGUU-CGGCU-----------UGU---AGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 29762 | 0.73 | 0.399345 |
Target: 5'- ---cCGGCGAGCUGAucgcgaggaucGCcgCGUCGCGc -3' miRNA: 3'- aguuGCCGUUCGGCU-----------UGuaGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 8748 | 0.73 | 0.408858 |
Target: 5'- uUCGACgaaacagucguGGCuccuGCCGuuCAUCGUCGCGg -3' miRNA: 3'- -AGUUG-----------CCGuu--CGGCuuGUAGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 13411 | 0.72 | 0.418512 |
Target: 5'- gUCGGCGGCAAGCCGcugcugacGACGagCGgCGCa -3' miRNA: 3'- -AGUUGCCGUUCGGC--------UUGUa-GCaGCGc -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 8714 | 0.72 | 0.428303 |
Target: 5'- gCGGCGGUAAGC---GCuUCGUCGCGg -3' miRNA: 3'- aGUUGCCGUUCGgcuUGuAGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 27983 | 0.72 | 0.448284 |
Target: 5'- cCGcCGGCucgGGCCGAAUcgCGUCGuCGg -3' miRNA: 3'- aGUuGCCGu--UCGGCUUGuaGCAGC-GC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 2223 | 0.72 | 0.458466 |
Target: 5'- gCGGCuGGCGcauccGGUCGGAaGUCGUCGCGa -3' miRNA: 3'- aGUUG-CCGU-----UCGGCUUgUAGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 2081 | 0.74 | 0.353959 |
Target: 5'- gUCGACGGCAAGCCGGuGCAccCGgacuaUGCGg -3' miRNA: 3'- -AGUUGCCGUUCGGCU-UGUa-GCa----GCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 30701 | 0.74 | 0.336853 |
Target: 5'- cUCGGCGaGCAGGUgcgCGAGCAgcUUGUCGCGc -3' miRNA: 3'- -AGUUGC-CGUUCG---GCUUGU--AGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 10374 | 0.74 | 0.336853 |
Target: 5'- aCAACGGCGuGCCGA-CGUCGacuaUCGCc -3' miRNA: 3'- aGUUGCCGUuCGGCUuGUAGC----AGCGc -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 29511 | 0.79 | 0.177941 |
Target: 5'- cUCGACGGCGGGCgcguuguaGAACAgcaCGUCGCGc -3' miRNA: 3'- -AGUUGCCGUUCGg-------CUUGUa--GCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 28279 | 0.77 | 0.240491 |
Target: 5'- aUCAuCGGCAcGCCGAgcgcgcgcaGCGUCGUgGCGa -3' miRNA: 3'- -AGUuGCCGUuCGGCU---------UGUAGCAgCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 29878 | 0.75 | 0.289202 |
Target: 5'- --uGCGGCAGGCCGAGCGUaCGgCGUu -3' miRNA: 3'- aguUGCCGUUCGGCUUGUA-GCaGCGc -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 14705 | 0.75 | 0.296761 |
Target: 5'- gCGGCgGGCGGGCCGGGCGcggCGaUCGCGc -3' miRNA: 3'- aGUUG-CCGUUCGGCUUGUa--GC-AGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 35197 | 0.75 | 0.304473 |
Target: 5'- cCAACGGCGGGgCGAu--UCGUUGCGc -3' miRNA: 3'- aGUUGCCGUUCgGCUuguAGCAGCGC- -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 16502 | 0.75 | 0.312338 |
Target: 5'- gUCGGCGaugucGCAGGCCGAucGCGUCGcCGCc -3' miRNA: 3'- -AGUUGC-----CGUUCGGCU--UGUAGCaGCGc -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 17414 | 0.75 | 0.312338 |
Target: 5'- gUCGGCGGCAuGGCgaaGAACAUCG-CGCu -3' miRNA: 3'- -AGUUGCCGU-UCGg--CUUGUAGCaGCGc -5' |
|||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 33943 | 0.75 | 0.312338 |
Target: 5'- cCGACGGCGcucGgCGAGCA-CGUCGCGu -3' miRNA: 3'- aGUUGCCGUu--CgGCUUGUaGCAGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home