Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28133 | 3' | -52.8 | NC_005887.1 | + | 17663 | 0.66 | 0.807096 |
Target: 5'- aUCuuGCGcGCGAGCgcgggauugaCGGGCGuguUCGUCGCGc -3' miRNA: 3'- -AGu-UGC-CGUUCG----------GCUUGU---AGCAGCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 6697 | 0.67 | 0.745276 |
Target: 5'- aCAACGaGCcauGCCGAgGCGUUGUCGg- -3' miRNA: 3'- aGUUGC-CGuu-CGGCU-UGUAGCAGCgc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 41326 | 0.67 | 0.745276 |
Target: 5'- gUCGACGGCGccauugccgacGCCGAGCAggugCGUgUGCu -3' miRNA: 3'- -AGUUGCCGUu----------CGGCUUGUa---GCA-GCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 5215 | 0.82 | 0.116066 |
Target: 5'- aUCAGCGGCGcGCCG-ACGUCGggcagCGCGg -3' miRNA: 3'- -AGUUGCCGUuCGGCuUGUAGCa----GCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 26276 | 0.66 | 0.797211 |
Target: 5'- cCAGCuGCAGGCCGGcCAcCGcCGCc -3' miRNA: 3'- aGUUGcCGUUCGGCUuGUaGCaGCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 2514 | 0.66 | 0.796212 |
Target: 5'- gUCGACGGC--GCCGuAGCGcgcgaggugucauUCGUCgGCGc -3' miRNA: 3'- -AGUUGCCGuuCGGC-UUGU-------------AGCAG-CGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 35472 | 0.66 | 0.776902 |
Target: 5'- cUCGugGGCGaaGGCCGuGCG-CGggCGCa -3' miRNA: 3'- -AGUugCCGU--UCGGCuUGUaGCa-GCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 39088 | 0.66 | 0.776902 |
Target: 5'- cUCcGCaGCAAGCCGc-CGUCGacugCGCGg -3' miRNA: 3'- -AGuUGcCGUUCGGCuuGUAGCa---GCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 19322 | 0.66 | 0.766503 |
Target: 5'- gUCGGCGGCAccaagcgguacaGGUgGAGCAUCGaacccggUGCa -3' miRNA: 3'- -AGUUGCCGU------------UCGgCUUGUAGCa------GCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 19822 | 0.67 | 0.755956 |
Target: 5'- uUCGuUGGCAGGuaGAGCGacagCGUCGUGc -3' miRNA: 3'- -AGUuGCCGUUCggCUUGUa---GCAGCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 4956 | 0.67 | 0.755956 |
Target: 5'- gCGcCGGCccucGgCGAcCAUCGUCGCGa -3' miRNA: 3'- aGUuGCCGuu--CgGCUuGUAGCAGCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 2559 | 0.66 | 0.766503 |
Target: 5'- --cACGaGCAGGCCGGGC-UCGcCGuCGa -3' miRNA: 3'- aguUGC-CGUUCGGCUUGuAGCaGC-GC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 12539 | 0.66 | 0.807096 |
Target: 5'- aUCAGC-GCGAGCUGAGaagCG-CGCGu -3' miRNA: 3'- -AGUUGcCGUUCGGCUUguaGCaGCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 40995 | 0.67 | 0.755956 |
Target: 5'- ---uCGGCGuuGCCGAAC-UCGgugCGCGc -3' miRNA: 3'- aguuGCCGUu-CGGCUUGuAGCa--GCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 13493 | 0.66 | 0.807096 |
Target: 5'- -gAGCGGUgcGCCGc---UCGUCGCa -3' miRNA: 3'- agUUGCCGuuCGGCuuguAGCAGCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 26982 | 0.66 | 0.776902 |
Target: 5'- gUCGACGGC-GGCC-AGCGacUCGggCGCa -3' miRNA: 3'- -AGUUGCCGuUCGGcUUGU--AGCa-GCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 41988 | 0.67 | 0.755956 |
Target: 5'- cUCAGCuGCGAGCCGcucAGCA-CGU-GCGg -3' miRNA: 3'- -AGUUGcCGUUCGGC---UUGUaGCAgCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 36804 | 0.67 | 0.745276 |
Target: 5'- --cGCGGCAucGGCaCGAuuaACAUCGuuUCGCa -3' miRNA: 3'- aguUGCCGU--UCG-GCU---UGUAGC--AGCGc -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 32047 | 0.66 | 0.805134 |
Target: 5'- aCAGCGGCAuuGGCCGAGaagggagUGCGu -3' miRNA: 3'- aGUUGCCGU--UCGGCUUguagca-GCGC- -5' |
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28133 | 3' | -52.8 | NC_005887.1 | + | 17775 | 0.66 | 0.791191 |
Target: 5'- -gAACGGCAccuuguuguAGCCGGccgucacgaACAUCGUgccgacgucgccaagCGCGg -3' miRNA: 3'- agUUGCCGU---------UCGGCU---------UGUAGCA---------------GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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