miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 3' -52.8 NC_005887.1 + 7511 0.67 0.701462
Target:  5'- cUCGGCGGCAcgaccCCGAGCGUCa-CGCu -3'
miRNA:   3'- -AGUUGCCGUuc---GGCUUGUAGcaGCGc -5'
28133 3' -52.8 NC_005887.1 + 7518 0.67 0.701462
Target:  5'- -gAACGGCAuGCCGAuCA-CGaCGCGc -3'
miRNA:   3'- agUUGCCGUuCGGCUuGUaGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 7892 0.67 0.723563
Target:  5'- cCGACGaGCAGGCCGGcgacgaucugcaguaACGgacugacacauggCGUCGCa -3'
miRNA:   3'- aGUUGC-CGUUCGGCU---------------UGUa------------GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 8407 0.67 0.723563
Target:  5'- -aGGCGcGUggGCCGAGCAcgaccaggcuaUCGcCGCa -3'
miRNA:   3'- agUUGC-CGuuCGGCUUGU-----------AGCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 8526 0.7 0.543871
Target:  5'- -gAGCGGUugcGCCGGGCGcUCGaUCGCGu -3'
miRNA:   3'- agUUGCCGuu-CGGCUUGU-AGC-AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 8714 0.72 0.428303
Target:  5'- gCGGCGGUAAGC---GCuUCGUCGCGg -3'
miRNA:   3'- aGUUGCCGUUCGgcuUGuAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 8748 0.73 0.408858
Target:  5'- uUCGACgaaacagucguGGCuccuGCCGuuCAUCGUCGCGg -3'
miRNA:   3'- -AGUUG-----------CCGuu--CGGCuuGUAGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 8757 0.7 0.566093
Target:  5'- --cGCGGCGGaucGCCGGgcccuGCAcCGUCGCGa -3'
miRNA:   3'- aguUGCCGUU---CGGCU-----UGUaGCAGCGC- -5'
28133 3' -52.8 NC_005887.1 + 9505 0.71 0.46877
Target:  5'- ---cCGGCAugcuGCCGAACAcCGUCGUc -3'
miRNA:   3'- aguuGCCGUu---CGGCUUGUaGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 9561 0.68 0.690298
Target:  5'- uUCGGCaGCAugccggggucGGCCGggUcguUCGUCGCc -3'
miRNA:   3'- -AGUUGcCGU----------UCGGCuuGu--AGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 10374 0.74 0.336853
Target:  5'- aCAACGGCGuGCCGA-CGUCGacuaUCGCc -3'
miRNA:   3'- aGUUGCCGUuCGGCUuGUAGC----AGCGc -5'
28133 3' -52.8 NC_005887.1 + 11041 0.67 0.712554
Target:  5'- cUCGACGaGCGuccAGCCGAucuGCGUgGaCGCGc -3'
miRNA:   3'- -AGUUGC-CGU---UCGGCU---UGUAgCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 11183 0.66 0.776902
Target:  5'- gCGAUcGCAugGGCUGAACAucuaggcuUCGUCGCc -3'
miRNA:   3'- aGUUGcCGU--UCGGCUUGU--------AGCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 11987 0.69 0.633825
Target:  5'- -gAACGGCAGGUCGcGCccaCGUUGCa -3'
miRNA:   3'- agUUGCCGUUCGGCuUGua-GCAGCGc -5'
28133 3' -52.8 NC_005887.1 + 12130 0.7 0.532867
Target:  5'- -gGACGaGCAGGCCGc-CGUCG-CGCGc -3'
miRNA:   3'- agUUGC-CGUUCGGCuuGUAGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 12370 0.71 0.479191
Target:  5'- ---gUGGCAGGCCGAGCAgcacCG-CGCa -3'
miRNA:   3'- aguuGCCGUUCGGCUUGUa---GCaGCGc -5'
28133 3' -52.8 NC_005887.1 + 12539 0.66 0.807096
Target:  5'- aUCAGC-GCGAGCUGAGaagCG-CGCGu -3'
miRNA:   3'- -AGUUGcCGUUCGGCUUguaGCaGCGC- -5'
28133 3' -52.8 NC_005887.1 + 12725 0.69 0.62248
Target:  5'- gUCGGCGGCAAaucGCCGAcccAC-UCGUaaccUGCGg -3'
miRNA:   3'- -AGUUGCCGUU---CGGCU---UGuAGCA----GCGC- -5'
28133 3' -52.8 NC_005887.1 + 12902 0.67 0.723563
Target:  5'- aUCGgcACGGCGAGCC-AGCA-CGccgguuUCGCGa -3'
miRNA:   3'- -AGU--UGCCGUUCGGcUUGUaGC------AGCGC- -5'
28133 3' -52.8 NC_005887.1 + 13411 0.72 0.418512
Target:  5'- gUCGGCGGCAAGCCGcugcugacGACGagCGgCGCa -3'
miRNA:   3'- -AGUUGCCGUUCGGC--------UUGUa-GCaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.