Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28133 | 5' | -55 | NC_005887.1 | + | 30865 | 0.66 | 0.685312 |
Target: 5'- uGCGCuGGuccUGAUg-CCAGAGCGCg -3' miRNA: 3'- cCGCGcCCuu-GCUAaaGGUCUCGCGg -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 37706 | 0.66 | 0.696291 |
Target: 5'- cGC-CGGGGGCGAUcaggUUCAGcGCGUa -3' miRNA: 3'- cCGcGCCCUUGCUAa---AGGUCuCGCGg -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 16096 | 0.66 | 0.696291 |
Target: 5'- uGGCcgGUGGuGaAACGcUUUCCGGuGGCGCUg -3' miRNA: 3'- -CCG--CGCC-C-UUGCuAAAGGUC-UCGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 34397 | 0.65 | 0.702848 |
Target: 5'- gGGCGCGaGGcccggccugcaaucAGucgagcucguccuCGGUUUCCGGAGCggucGCCu -3' miRNA: 3'- -CCGCGC-CC--------------UU-------------GCUAAAGGUCUCG----CGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 282 | 0.65 | 0.707206 |
Target: 5'- uGGCGCGGGAACug---CguG-GCGUg -3' miRNA: 3'- -CCGCGCCCUUGcuaaaGguCuCGCGg -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 23202 | 0.65 | 0.707206 |
Target: 5'- cGGC-CGGGGGCGGcuacUUCaAGGGCcacGCCg -3' miRNA: 3'- -CCGcGCCCUUGCUa---AAGgUCUCG---CGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 13965 | 0.65 | 0.707206 |
Target: 5'- gGGCGCGcGGucACGGUgcaccugacgUUCCcgacgaAGAauGCGCCg -3' miRNA: 3'- -CCGCGC-CCu-UGCUA----------AAGG------UCU--CGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 14081 | 0.65 | 0.707206 |
Target: 5'- cGGCGCGccGGCGGUUg-CGGAGgCGCg -3' miRNA: 3'- -CCGCGCccUUGCUAAagGUCUC-GCGg -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 15916 | 0.65 | 0.707206 |
Target: 5'- uGCGCGcGGGCG-UUUCCcucGAucGCGCCg -3' miRNA: 3'- cCGCGCcCUUGCuAAAGGu--CU--CGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 34424 | 0.65 | 0.707206 |
Target: 5'- -aCGCGGG-GCGcucGUcUCCAGccguggccGGCGCCa -3' miRNA: 3'- ccGCGCCCuUGC---UAaAGGUC--------UCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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