miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 24088 0.69 0.51915
Target:  5'- aGGCauggaaGGGAuuuACGAUgugcggcaggagaUUCCcGAGCGCCg -3'
miRNA:   3'- -CCGcg----CCCU---UGCUA-------------AAGGuCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 1430 0.68 0.541698
Target:  5'- cGCGCGGGAcAgGAUguagcgCUcGAGCGUCu -3'
miRNA:   3'- cCGCGCCCU-UgCUAaa----GGuCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 33835 0.68 0.541698
Target:  5'- cGGCGCGGcGAuCGAacgcaUgCAGGGCGUa -3'
miRNA:   3'- -CCGCGCC-CUuGCUaa---AgGUCUCGCGg -5'
28133 5' -55 NC_005887.1 + 27768 0.68 0.55255
Target:  5'- aGCGCGccGGCGAgg--UAGAGCGCCa -3'
miRNA:   3'- cCGCGCccUUGCUaaagGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 21375 0.68 0.563467
Target:  5'- cGGCGCGGuGGGCGugcccgugaauGUgggcgacgCCAGcAGCGCa -3'
miRNA:   3'- -CCGCGCC-CUUGC-----------UAaa------GGUC-UCGCGg -5'
28133 5' -55 NC_005887.1 + 4879 0.68 0.563467
Target:  5'- uGGCGCGGcaGAacugcGCGAgaUCCGcGAGCacgGCCu -3'
miRNA:   3'- -CCGCGCC--CU-----UGCUaaAGGU-CUCG---CGG- -5'
28133 5' -55 NC_005887.1 + 14054 0.68 0.574441
Target:  5'- cGGCGCauucuucgucGGGAACGucaggugcaccGUgaCCGGcGCGCCc -3'
miRNA:   3'- -CCGCG----------CCCUUGC-----------UAaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 26428 0.68 0.574441
Target:  5'- cGCGCGGGAACGcgcgcUgCAGccGCGCg -3'
miRNA:   3'- cCGCGCCCUUGCuaa--AgGUCu-CGCGg -5'
28133 5' -55 NC_005887.1 + 16208 0.68 0.585463
Target:  5'- cGGCGCGccggugguuggcGGggUGGUUgcgCgCGGcgcAGCGCCa -3'
miRNA:   3'- -CCGCGC------------CCuuGCUAAa--G-GUC---UCGCGG- -5'
28133 5' -55 NC_005887.1 + 13182 0.67 0.596525
Target:  5'- --aGCGGGAGCGGUcgagCAGGcCGCCg -3'
miRNA:   3'- ccgCGCCCUUGCUAaag-GUCUcGCGG- -5'
28133 5' -55 NC_005887.1 + 11055 0.67 0.596525
Target:  5'- aGGCGUGGacACuGAUUUCC---GCGCCg -3'
miRNA:   3'- -CCGCGCCcuUG-CUAAAGGucuCGCGG- -5'
28133 5' -55 NC_005887.1 + 4773 0.67 0.607618
Target:  5'- aGCGCGGGAAgcUGAcg-CCAGccGGCgagGCCg -3'
miRNA:   3'- cCGCGCCCUU--GCUaaaGGUC--UCG---CGG- -5'
28133 5' -55 NC_005887.1 + 26961 0.67 0.612062
Target:  5'- gGGCGCagcuucucggcauuuGaGGAACGcuggUUCCAGucGGUGCCc -3'
miRNA:   3'- -CCGCG---------------C-CCUUGCua--AAGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 35126 0.67 0.618732
Target:  5'- gGGCGCGGau-CGGaaUCC--GGCGCCa -3'
miRNA:   3'- -CCGCGCCcuuGCUaaAGGucUCGCGG- -5'
28133 5' -55 NC_005887.1 + 40972 0.67 0.629858
Target:  5'- cGGCGCGGGccUGAUguacgugCCcGAGCucgaaGCCu -3'
miRNA:   3'- -CCGCGCCCuuGCUAaa-----GGuCUCG-----CGG- -5'
28133 5' -55 NC_005887.1 + 3297 0.67 0.640987
Target:  5'- cGGCGCGGucGAAuCGAacaucUUCUGcGAGCGCUc -3'
miRNA:   3'- -CCGCGCC--CUU-GCUa----AAGGU-CUCGCGG- -5'
28133 5' -55 NC_005887.1 + 17172 0.66 0.668749
Target:  5'- aGGCGUGGGAGCGcgcgaacgcggCCGcacgcggcaauguuGCGCCg -3'
miRNA:   3'- -CCGCGCCCUUGCuaaa-------GGUcu------------CGCGG- -5'
28133 5' -55 NC_005887.1 + 8407 0.66 0.674281
Target:  5'- aGGCGCGuGGGcCGAgcacgaCCAGGcuauCGCCg -3'
miRNA:   3'- -CCGCGC-CCUuGCUaaa---GGUCUc---GCGG- -5'
28133 5' -55 NC_005887.1 + 41551 0.66 0.674281
Target:  5'- cGGCGCGcacGCGAag-UCAGccAGCGCCg -3'
miRNA:   3'- -CCGCGCccuUGCUaaaGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 30865 0.66 0.685312
Target:  5'- uGCGCuGGuccUGAUg-CCAGAGCGCg -3'
miRNA:   3'- cCGCGcCCuu-GCUAaaGGUCUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.