miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 13759 1.01 0.003362
Target:  5'- uGGCGCGaGGACGAUUUCCAGAGCGCCg -3'
miRNA:   3'- -CCGCGCcCUUGCUAAAGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 11374 0.78 0.1494
Target:  5'- aGCGCGGGcgucAGCGcag-CCGGAGCGCUg -3'
miRNA:   3'- cCGCGCCC----UUGCuaaaGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 17651 0.72 0.346909
Target:  5'- aGCGCGGGAuugACGGgcgugUUCGucGCGCCg -3'
miRNA:   3'- cCGCGCCCU---UGCUaa---AGGUcuCGCGG- -5'
28133 5' -55 NC_005887.1 + 15930 0.72 0.355399
Target:  5'- cGCGCGGGccggaauCGAUgcgCCGGccacGCGCCg -3'
miRNA:   3'- cCGCGCCCuu-----GCUAaa-GGUCu---CGCGG- -5'
28133 5' -55 NC_005887.1 + 37445 0.72 0.355399
Target:  5'- aGCGCGGcGcuugccugcGCGGUUUgCAGuGCGCCg -3'
miRNA:   3'- cCGCGCCcU---------UGCUAAAgGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 23345 0.71 0.381738
Target:  5'- cGGCGCGGGcuGCGGcaaccgCCAcGAgcuGCGCCu -3'
miRNA:   3'- -CCGCGCCCu-UGCUaaa---GGU-CU---CGCGG- -5'
28133 5' -55 NC_005887.1 + 35383 0.71 0.38989
Target:  5'- cGGCGCGcggcaguGGAGCGAUg--CAGAGaagGCCg -3'
miRNA:   3'- -CCGCGC-------CCUUGCUAaagGUCUCg--CGG- -5'
28133 5' -55 NC_005887.1 + 35939 0.71 0.409346
Target:  5'- gGGCGCGGcGucGCGGUgucugCC-GAGCGCa -3'
miRNA:   3'- -CCGCGCC-Cu-UGCUAaa---GGuCUCGCGg -5'
28133 5' -55 NC_005887.1 + 34651 0.7 0.418822
Target:  5'- aGGCGCGccGGcuugcCGGUUUCCGGAucCGCCa -3'
miRNA:   3'- -CCGCGC--CCuu---GCUAAAGGUCUc-GCGG- -5'
28133 5' -55 NC_005887.1 + 18457 0.7 0.428429
Target:  5'- cGGCGUaggccaucGGGuucGCGAgcgCCGGcGCGCCg -3'
miRNA:   3'- -CCGCG--------CCCu--UGCUaaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 929 0.7 0.428429
Target:  5'- cGGCGCGGGccACGcg-UCCAcGGGCaCCu -3'
miRNA:   3'- -CCGCGCCCu-UGCuaaAGGU-CUCGcGG- -5'
28133 5' -55 NC_005887.1 + 26489 0.7 0.438165
Target:  5'- gGGCauGCcGGccgcuuccucGACGAUUUCCucGAGCGCCu -3'
miRNA:   3'- -CCG--CGcCC----------UUGCUAAAGGu-CUCGCGG- -5'
28133 5' -55 NC_005887.1 + 26014 0.7 0.447035
Target:  5'- cGGCGuCGGGGGCGAgg-CUaccggggauugaaAGGGCGUa -3'
miRNA:   3'- -CCGC-GCCCUUGCUaaaGG-------------UCUCGCGg -5'
28133 5' -55 NC_005887.1 + 19188 0.7 0.448027
Target:  5'- cGGCGCGGGcGugGAga--CAGgcGGCGCg -3'
miRNA:   3'- -CCGCGCCC-UugCUaaagGUC--UCGCGg -5'
28133 5' -55 NC_005887.1 + 31384 0.7 0.468112
Target:  5'- cGGCaCGuGGGACGugaccaCCGGuGCGCCg -3'
miRNA:   3'- -CCGcGC-CCUUGCuaaa--GGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 30460 0.7 0.468112
Target:  5'- cGGCGUGGcGAA--GUUUUCAGAGgcgaCGCCg -3'
miRNA:   3'- -CCGCGCC-CUUgcUAAAGGUCUC----GCGG- -5'
28133 5' -55 NC_005887.1 + 33184 0.7 0.468112
Target:  5'- cGuaGCGGccGGACGAgcccgUCCAGAugaacGCGCCg -3'
miRNA:   3'- -CcgCGCC--CUUGCUaa---AGGUCU-----CGCGG- -5'
28133 5' -55 NC_005887.1 + 28830 0.69 0.488649
Target:  5'- cGGCGCGGuacuggcccgGGACGccagacaucGUUUUCGGAaagauGCGCCg -3'
miRNA:   3'- -CCGCGCC----------CUUGC---------UAAAGGUCU-----CGCGG- -5'
28133 5' -55 NC_005887.1 + 28030 0.69 0.5096
Target:  5'- cGGCgGCGGcaaGAGCGAUacCCAGcAGCGUa -3'
miRNA:   3'- -CCG-CGCC---CUUGCUAaaGGUC-UCGCGg -5'
28133 5' -55 NC_005887.1 + 15629 0.69 0.5096
Target:  5'- aGGCGgcCGGGcuCGccgaUCAGGGCGCCg -3'
miRNA:   3'- -CCGC--GCCCuuGCuaaaGGUCUCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.