miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 8407 0.66 0.674281
Target:  5'- aGGCGCGuGGGcCGAgcacgaCCAGGcuauCGCCg -3'
miRNA:   3'- -CCGCGC-CCUuGCUaaa---GGUCUc---GCGG- -5'
28133 5' -55 NC_005887.1 + 27768 0.68 0.55255
Target:  5'- aGCGCGccGGCGAgg--UAGAGCGCCa -3'
miRNA:   3'- cCGCGCccUUGCUaaagGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 26428 0.68 0.574441
Target:  5'- cGCGCGGGAACGcgcgcUgCAGccGCGCg -3'
miRNA:   3'- cCGCGCCCUUGCuaa--AgGUCu-CGCGg -5'
28133 5' -55 NC_005887.1 + 13182 0.67 0.596525
Target:  5'- --aGCGGGAGCGGUcgagCAGGcCGCCg -3'
miRNA:   3'- ccgCGCCCUUGCUAaag-GUCUcGCGG- -5'
28133 5' -55 NC_005887.1 + 11055 0.67 0.596525
Target:  5'- aGGCGUGGacACuGAUUUCC---GCGCCg -3'
miRNA:   3'- -CCGCGCCcuUG-CUAAAGGucuCGCGG- -5'
28133 5' -55 NC_005887.1 + 4773 0.67 0.607618
Target:  5'- aGCGCGGGAAgcUGAcg-CCAGccGGCgagGCCg -3'
miRNA:   3'- cCGCGCCCUU--GCUaaaGGUC--UCG---CGG- -5'
28133 5' -55 NC_005887.1 + 35126 0.67 0.618732
Target:  5'- gGGCGCGGau-CGGaaUCC--GGCGCCa -3'
miRNA:   3'- -CCGCGCCcuuGCUaaAGGucUCGCGG- -5'
28133 5' -55 NC_005887.1 + 40972 0.67 0.629858
Target:  5'- cGGCGCGGGccUGAUguacgugCCcGAGCucgaaGCCu -3'
miRNA:   3'- -CCGCGCCCuuGCUAaa-----GGuCUCG-----CGG- -5'
28133 5' -55 NC_005887.1 + 17172 0.66 0.668749
Target:  5'- aGGCGUGGGAGCGcgcgaacgcggCCGcacgcggcaauguuGCGCCg -3'
miRNA:   3'- -CCGCGCCCUUGCuaaa-------GGUcu------------CGCGG- -5'
28133 5' -55 NC_005887.1 + 33835 0.68 0.541698
Target:  5'- cGGCGCGGcGAuCGAacgcaUgCAGGGCGUa -3'
miRNA:   3'- -CCGCGCC-CUuGCUaa---AgGUCUCGCGg -5'
28133 5' -55 NC_005887.1 + 15629 0.69 0.5096
Target:  5'- aGGCGgcCGGGcuCGccgaUCAGGGCGCCg -3'
miRNA:   3'- -CCGC--GCCCuuGCuaaaGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 28830 0.69 0.488649
Target:  5'- cGGCGCGGuacuggcccgGGACGccagacaucGUUUUCGGAaagauGCGCCg -3'
miRNA:   3'- -CCGCGCC----------CUUGC---------UAAAGGUCU-----CGCGG- -5'
28133 5' -55 NC_005887.1 + 11374 0.78 0.1494
Target:  5'- aGCGCGGGcgucAGCGcag-CCGGAGCGCUg -3'
miRNA:   3'- cCGCGCCC----UUGCuaaaGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 15930 0.72 0.355399
Target:  5'- cGCGCGGGccggaauCGAUgcgCCGGccacGCGCCg -3'
miRNA:   3'- cCGCGCCCuu-----GCUAaa-GGUCu---CGCGG- -5'
28133 5' -55 NC_005887.1 + 37445 0.72 0.355399
Target:  5'- aGCGCGGcGcuugccugcGCGGUUUgCAGuGCGCCg -3'
miRNA:   3'- cCGCGCCcU---------UGCUAAAgGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 34651 0.7 0.418822
Target:  5'- aGGCGCGccGGcuugcCGGUUUCCGGAucCGCCa -3'
miRNA:   3'- -CCGCGC--CCuu---GCUAAAGGUCUc-GCGG- -5'
28133 5' -55 NC_005887.1 + 26489 0.7 0.438165
Target:  5'- gGGCauGCcGGccgcuuccucGACGAUUUCCucGAGCGCCu -3'
miRNA:   3'- -CCG--CGcCC----------UUGCUAAAGGu-CUCGCGG- -5'
28133 5' -55 NC_005887.1 + 26014 0.7 0.447035
Target:  5'- cGGCGuCGGGGGCGAgg-CUaccggggauugaaAGGGCGUa -3'
miRNA:   3'- -CCGC-GCCCUUGCUaaaGG-------------UCUCGCGg -5'
28133 5' -55 NC_005887.1 + 19188 0.7 0.448027
Target:  5'- cGGCGCGGGcGugGAga--CAGgcGGCGCg -3'
miRNA:   3'- -CCGCGCCC-UugCUaaagGUC--UCGCGg -5'
28133 5' -55 NC_005887.1 + 33184 0.7 0.468112
Target:  5'- cGuaGCGGccGGACGAgcccgUCCAGAugaacGCGCCg -3'
miRNA:   3'- -CcgCGCC--CUUGCUaa---AGGUCU-----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.