miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 14081 0.65 0.707206
Target:  5'- cGGCGCGccGGCGGUUg-CGGAGgCGCg -3'
miRNA:   3'- -CCGCGCccUUGCUAAagGUCUC-GCGg -5'
28133 5' -55 NC_005887.1 + 35939 0.71 0.409346
Target:  5'- gGGCGCGGcGucGCGGUgucugCC-GAGCGCa -3'
miRNA:   3'- -CCGCGCC-Cu-UGCUAaa---GGuCUCGCGg -5'
28133 5' -55 NC_005887.1 + 35383 0.71 0.38989
Target:  5'- cGGCGCGcggcaguGGAGCGAUg--CAGAGaagGCCg -3'
miRNA:   3'- -CCGCGC-------CCUUGCUAaagGUCUCg--CGG- -5'
28133 5' -55 NC_005887.1 + 17651 0.72 0.346909
Target:  5'- aGCGCGGGAuugACGGgcgugUUCGucGCGCCg -3'
miRNA:   3'- cCGCGCCCU---UGCUaa---AGGUcuCGCGG- -5'
28133 5' -55 NC_005887.1 + 26961 0.67 0.612062
Target:  5'- gGGCGCagcuucucggcauuuGaGGAACGcuggUUCCAGucGGUGCCc -3'
miRNA:   3'- -CCGCG---------------C-CCUUGCua--AAGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 16208 0.68 0.585463
Target:  5'- cGGCGCGccggugguuggcGGggUGGUUgcgCgCGGcgcAGCGCCa -3'
miRNA:   3'- -CCGCGC------------CCuuGCUAAa--G-GUC---UCGCGG- -5'
28133 5' -55 NC_005887.1 + 4879 0.68 0.563467
Target:  5'- uGGCGCGGcaGAacugcGCGAgaUCCGcGAGCacgGCCu -3'
miRNA:   3'- -CCGCGCC--CU-----UGCUaaAGGU-CUCG---CGG- -5'
28133 5' -55 NC_005887.1 + 21375 0.68 0.563467
Target:  5'- cGGCGCGGuGGGCGugcccgugaauGUgggcgacgCCAGcAGCGCa -3'
miRNA:   3'- -CCGCGCC-CUUGC-----------UAaa------GGUC-UCGCGg -5'
28133 5' -55 NC_005887.1 + 28030 0.69 0.5096
Target:  5'- cGGCgGCGGcaaGAGCGAUacCCAGcAGCGUa -3'
miRNA:   3'- -CCG-CGCC---CUUGCUAaaGGUC-UCGCGg -5'
28133 5' -55 NC_005887.1 + 31384 0.7 0.468112
Target:  5'- cGGCaCGuGGGACGugaccaCCGGuGCGCCg -3'
miRNA:   3'- -CCGcGC-CCUUGCuaaa--GGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 24088 0.69 0.51915
Target:  5'- aGGCauggaaGGGAuuuACGAUgugcggcaggagaUUCCcGAGCGCCg -3'
miRNA:   3'- -CCGcg----CCCU---UGCUA-------------AAGGuCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 15916 0.65 0.707206
Target:  5'- uGCGCGcGGGCG-UUUCCcucGAucGCGCCg -3'
miRNA:   3'- cCGCGCcCUUGCuAAAGGu--CU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 929 0.7 0.428429
Target:  5'- cGGCGCGGGccACGcg-UCCAcGGGCaCCu -3'
miRNA:   3'- -CCGCGCCCu-UGCuaaAGGU-CUCGcGG- -5'
28133 5' -55 NC_005887.1 + 34424 0.65 0.707206
Target:  5'- -aCGCGGG-GCGcucGUcUCCAGccguggccGGCGCCa -3'
miRNA:   3'- ccGCGCCCuUGC---UAaAGGUC--------UCGCGG- -5'
28133 5' -55 NC_005887.1 + 1430 0.68 0.541698
Target:  5'- cGCGCGGGAcAgGAUguagcgCUcGAGCGUCu -3'
miRNA:   3'- cCGCGCCCU-UgCUAaa----GGuCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 18457 0.7 0.428429
Target:  5'- cGGCGUaggccaucGGGuucGCGAgcgCCGGcGCGCCg -3'
miRNA:   3'- -CCGCG--------CCCu--UGCUaaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 23345 0.71 0.381738
Target:  5'- cGGCGCGGGcuGCGGcaaccgCCAcGAgcuGCGCCu -3'
miRNA:   3'- -CCGCGCCCu-UGCUaaa---GGU-CU---CGCGG- -5'
28133 5' -55 NC_005887.1 + 3297 0.67 0.640987
Target:  5'- cGGCGCGGucGAAuCGAacaucUUCUGcGAGCGCUc -3'
miRNA:   3'- -CCGCGCC--CUU-GCUa----AAGGU-CUCGCGG- -5'
28133 5' -55 NC_005887.1 + 14054 0.68 0.574441
Target:  5'- cGGCGCauucuucgucGGGAACGucaggugcaccGUgaCCGGcGCGCCc -3'
miRNA:   3'- -CCGCG----------CCCUUGC-----------UAaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 30460 0.7 0.468112
Target:  5'- cGGCGUGGcGAA--GUUUUCAGAGgcgaCGCCg -3'
miRNA:   3'- -CCGCGCC-CUUgcUAAAGGUCUC----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.