miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 282 0.65 0.707206
Target:  5'- uGGCGCGGGAACug---CguG-GCGUg -3'
miRNA:   3'- -CCGCGCCCUUGcuaaaGguCuCGCGg -5'
28133 5' -55 NC_005887.1 + 929 0.7 0.428429
Target:  5'- cGGCGCGGGccACGcg-UCCAcGGGCaCCu -3'
miRNA:   3'- -CCGCGCCCu-UGCuaaAGGU-CUCGcGG- -5'
28133 5' -55 NC_005887.1 + 1430 0.68 0.541698
Target:  5'- cGCGCGGGAcAgGAUguagcgCUcGAGCGUCu -3'
miRNA:   3'- cCGCGCCCU-UgCUAaa----GGuCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 3297 0.67 0.640987
Target:  5'- cGGCGCGGucGAAuCGAacaucUUCUGcGAGCGCUc -3'
miRNA:   3'- -CCGCGCC--CUU-GCUa----AAGGU-CUCGCGG- -5'
28133 5' -55 NC_005887.1 + 4773 0.67 0.607618
Target:  5'- aGCGCGGGAAgcUGAcg-CCAGccGGCgagGCCg -3'
miRNA:   3'- cCGCGCCCUU--GCUaaaGGUC--UCG---CGG- -5'
28133 5' -55 NC_005887.1 + 4879 0.68 0.563467
Target:  5'- uGGCGCGGcaGAacugcGCGAgaUCCGcGAGCacgGCCu -3'
miRNA:   3'- -CCGCGCC--CU-----UGCUaaAGGU-CUCG---CGG- -5'
28133 5' -55 NC_005887.1 + 8407 0.66 0.674281
Target:  5'- aGGCGCGuGGGcCGAgcacgaCCAGGcuauCGCCg -3'
miRNA:   3'- -CCGCGC-CCUuGCUaaa---GGUCUc---GCGG- -5'
28133 5' -55 NC_005887.1 + 11055 0.67 0.596525
Target:  5'- aGGCGUGGacACuGAUUUCC---GCGCCg -3'
miRNA:   3'- -CCGCGCCcuUG-CUAAAGGucuCGCGG- -5'
28133 5' -55 NC_005887.1 + 11374 0.78 0.1494
Target:  5'- aGCGCGGGcgucAGCGcag-CCGGAGCGCUg -3'
miRNA:   3'- cCGCGCCC----UUGCuaaaGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 13182 0.67 0.596525
Target:  5'- --aGCGGGAGCGGUcgagCAGGcCGCCg -3'
miRNA:   3'- ccgCGCCCUUGCUAaag-GUCUcGCGG- -5'
28133 5' -55 NC_005887.1 + 13759 1.01 0.003362
Target:  5'- uGGCGCGaGGACGAUUUCCAGAGCGCCg -3'
miRNA:   3'- -CCGCGCcCUUGCUAAAGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 13965 0.65 0.707206
Target:  5'- gGGCGCGcGGucACGGUgcaccugacgUUCCcgacgaAGAauGCGCCg -3'
miRNA:   3'- -CCGCGC-CCu-UGCUA----------AAGG------UCU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 14054 0.68 0.574441
Target:  5'- cGGCGCauucuucgucGGGAACGucaggugcaccGUgaCCGGcGCGCCc -3'
miRNA:   3'- -CCGCG----------CCCUUGC-----------UAaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 14081 0.65 0.707206
Target:  5'- cGGCGCGccGGCGGUUg-CGGAGgCGCg -3'
miRNA:   3'- -CCGCGCccUUGCUAAagGUCUC-GCGg -5'
28133 5' -55 NC_005887.1 + 14701 0.66 0.685312
Target:  5'- cGuCGCGGcGGGCGGg--CCGG-GCGCg -3'
miRNA:   3'- cC-GCGCC-CUUGCUaaaGGUCuCGCGg -5'
28133 5' -55 NC_005887.1 + 15629 0.69 0.5096
Target:  5'- aGGCGgcCGGGcuCGccgaUCAGGGCGCCg -3'
miRNA:   3'- -CCGC--GCCCuuGCuaaaGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 15916 0.65 0.707206
Target:  5'- uGCGCGcGGGCG-UUUCCcucGAucGCGCCg -3'
miRNA:   3'- cCGCGCcCUUGCuAAAGGu--CU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 15930 0.72 0.355399
Target:  5'- cGCGCGGGccggaauCGAUgcgCCGGccacGCGCCg -3'
miRNA:   3'- cCGCGCCCuu-----GCUAaa-GGUCu---CGCGG- -5'
28133 5' -55 NC_005887.1 + 16096 0.66 0.696291
Target:  5'- uGGCcgGUGGuGaAACGcUUUCCGGuGGCGCUg -3'
miRNA:   3'- -CCG--CGCC-C-UUGCuAAAGGUC-UCGCGG- -5'
28133 5' -55 NC_005887.1 + 16208 0.68 0.585463
Target:  5'- cGGCGCGccggugguuggcGGggUGGUUgcgCgCGGcgcAGCGCCa -3'
miRNA:   3'- -CCGCGC------------CCuuGCUAAa--G-GUC---UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.