miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 41551 0.66 0.674281
Target:  5'- cGGCGCGcacGCGAag-UCAGccAGCGCCg -3'
miRNA:   3'- -CCGCGCccuUGCUaaaGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 40972 0.67 0.629858
Target:  5'- cGGCGCGGGccUGAUguacgugCCcGAGCucgaaGCCu -3'
miRNA:   3'- -CCGCGCCCuuGCUAaa-----GGuCUCG-----CGG- -5'
28133 5' -55 NC_005887.1 + 37706 0.66 0.696291
Target:  5'- cGC-CGGGGGCGAUcaggUUCAGcGCGUa -3'
miRNA:   3'- cCGcGCCCUUGCUAa---AGGUCuCGCGg -5'
28133 5' -55 NC_005887.1 + 37445 0.72 0.355399
Target:  5'- aGCGCGGcGcuugccugcGCGGUUUgCAGuGCGCCg -3'
miRNA:   3'- cCGCGCCcU---------UGCUAAAgGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 35939 0.71 0.409346
Target:  5'- gGGCGCGGcGucGCGGUgucugCC-GAGCGCa -3'
miRNA:   3'- -CCGCGCC-Cu-UGCUAaa---GGuCUCGCGg -5'
28133 5' -55 NC_005887.1 + 35383 0.71 0.38989
Target:  5'- cGGCGCGcggcaguGGAGCGAUg--CAGAGaagGCCg -3'
miRNA:   3'- -CCGCGC-------CCUUGCUAaagGUCUCg--CGG- -5'
28133 5' -55 NC_005887.1 + 35126 0.67 0.618732
Target:  5'- gGGCGCGGau-CGGaaUCC--GGCGCCa -3'
miRNA:   3'- -CCGCGCCcuuGCUaaAGGucUCGCGG- -5'
28133 5' -55 NC_005887.1 + 34651 0.7 0.418822
Target:  5'- aGGCGCGccGGcuugcCGGUUUCCGGAucCGCCa -3'
miRNA:   3'- -CCGCGC--CCuu---GCUAAAGGUCUc-GCGG- -5'
28133 5' -55 NC_005887.1 + 34424 0.65 0.707206
Target:  5'- -aCGCGGG-GCGcucGUcUCCAGccguggccGGCGCCa -3'
miRNA:   3'- ccGCGCCCuUGC---UAaAGGUC--------UCGCGG- -5'
28133 5' -55 NC_005887.1 + 34397 0.65 0.702848
Target:  5'- gGGCGCGaGGcccggccugcaaucAGucgagcucguccuCGGUUUCCGGAGCggucGCCu -3'
miRNA:   3'- -CCGCGC-CC--------------UU-------------GCUAAAGGUCUCG----CGG- -5'
28133 5' -55 NC_005887.1 + 33835 0.68 0.541698
Target:  5'- cGGCGCGGcGAuCGAacgcaUgCAGGGCGUa -3'
miRNA:   3'- -CCGCGCC-CUuGCUaa---AgGUCUCGCGg -5'
28133 5' -55 NC_005887.1 + 33184 0.7 0.468112
Target:  5'- cGuaGCGGccGGACGAgcccgUCCAGAugaacGCGCCg -3'
miRNA:   3'- -CcgCGCC--CUUGCUaa---AGGUCU-----CGCGG- -5'
28133 5' -55 NC_005887.1 + 31384 0.7 0.468112
Target:  5'- cGGCaCGuGGGACGugaccaCCGGuGCGCCg -3'
miRNA:   3'- -CCGcGC-CCUUGCuaaa--GGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 30865 0.66 0.685312
Target:  5'- uGCGCuGGuccUGAUg-CCAGAGCGCg -3'
miRNA:   3'- cCGCGcCCuu-GCUAaaGGUCUCGCGg -5'
28133 5' -55 NC_005887.1 + 30460 0.7 0.468112
Target:  5'- cGGCGUGGcGAA--GUUUUCAGAGgcgaCGCCg -3'
miRNA:   3'- -CCGCGCC-CUUgcUAAAGGUCUC----GCGG- -5'
28133 5' -55 NC_005887.1 + 28830 0.69 0.488649
Target:  5'- cGGCGCGGuacuggcccgGGACGccagacaucGUUUUCGGAaagauGCGCCg -3'
miRNA:   3'- -CCGCGCC----------CUUGC---------UAAAGGUCU-----CGCGG- -5'
28133 5' -55 NC_005887.1 + 28030 0.69 0.5096
Target:  5'- cGGCgGCGGcaaGAGCGAUacCCAGcAGCGUa -3'
miRNA:   3'- -CCG-CGCC---CUUGCUAaaGGUC-UCGCGg -5'
28133 5' -55 NC_005887.1 + 27768 0.68 0.55255
Target:  5'- aGCGCGccGGCGAgg--UAGAGCGCCa -3'
miRNA:   3'- cCGCGCccUUGCUaaagGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 26961 0.67 0.612062
Target:  5'- gGGCGCagcuucucggcauuuGaGGAACGcuggUUCCAGucGGUGCCc -3'
miRNA:   3'- -CCGCG---------------C-CCUUGCua--AAGGUC--UCGCGG- -5'
28133 5' -55 NC_005887.1 + 26489 0.7 0.438165
Target:  5'- gGGCauGCcGGccgcuuccucGACGAUUUCCucGAGCGCCu -3'
miRNA:   3'- -CCG--CGcCC----------UUGCUAAAGGu-CUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.