miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 40110 0.66 0.381022
Target:  5'- aCgGUAucgGGCGUAGGCCGGcCGCCu-CGAg -3'
miRNA:   3'- -GgCGU---UCGCGUCCGGCU-GCGGcuGUU- -5'
28134 5' -60 NC_005887.1 + 1840 0.66 0.398934
Target:  5'- gCCGac-GCGCAGGUCGAgcaUGUCGAgGAu -3'
miRNA:   3'- -GGCguuCGCGUCCGGCU---GCGGCUgUU- -5'
28134 5' -60 NC_005887.1 + 31129 0.66 0.406248
Target:  5'- -gGCGAGCuugccggGCAGGCCGugcgcauACGCCuGCAc -3'
miRNA:   3'- ggCGUUCG-------CGUCCGGC-------UGCGGcUGUu -5'
28134 5' -60 NC_005887.1 + 2562 0.66 0.389911
Target:  5'- gUGCAcGaGCAGGCCGGgcuCGCCGuCGAu -3'
miRNA:   3'- gGCGUuCgCGUCCGGCU---GCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 4027 0.66 0.381022
Target:  5'- uUCGCGAGCaacgGCGGGUCGacgagcuucugcGCGCCG-CGGa -3'
miRNA:   3'- -GGCGUUCG----CGUCCGGC------------UGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 7341 0.66 0.363656
Target:  5'- -aGCGGGCgGCcgGGGCCGAUGUCG-CGGu -3'
miRNA:   3'- ggCGUUCG-CG--UCCGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 9895 0.66 0.408089
Target:  5'- uCCaGCcGGUGCAGGUCGGCgGCaCGAUc- -3'
miRNA:   3'- -GG-CGuUCGCGUCCGGCUG-CG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 41604 0.66 0.408089
Target:  5'- gCC-CAGGUGCGgcGGCCGGCGCggccCGugAGg -3'
miRNA:   3'- -GGcGUUCGCGU--CCGGCUGCG----GCugUU- -5'
28134 5' -60 NC_005887.1 + 35423 0.66 0.389911
Target:  5'- cCCGCGuGGUGcCGGGCgugaagcuCGugGCCGGCc- -3'
miRNA:   3'- -GGCGU-UCGC-GUCCG--------GCugCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 21507 0.66 0.408089
Target:  5'- gCCgGCAaucGGCGCAa--CGACGCCGGCu- -3'
miRNA:   3'- -GG-CGU---UCGCGUccgGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 5019 0.67 0.31492
Target:  5'- cCCGCcgAGGCGCAGaCCGAaGCCaACGAa -3'
miRNA:   3'- -GGCG--UUCGCGUCcGGCUgCGGcUGUU- -5'
28134 5' -60 NC_005887.1 + 3075 0.67 0.330599
Target:  5'- cCUGCAGGCGCugaacGCCGACcacgGCCG-CAu -3'
miRNA:   3'- -GGCGUUCGCGuc---CGGCUG----CGGCuGUu -5'
28134 5' -60 NC_005887.1 + 26224 0.67 0.330599
Target:  5'- cCUGCAgcuGGCGCacGGGuCCGAucCGCuCGACGAu -3'
miRNA:   3'- -GGCGU---UCGCG--UCC-GGCU--GCG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 13566 0.67 0.31492
Target:  5'- gCCGCccgaGCAGGCCGACGaCG-CGAa -3'
miRNA:   3'- -GGCGuucgCGUCCGGCUGCgGCuGUU- -5'
28134 5' -60 NC_005887.1 + 18023 0.67 0.338652
Target:  5'- gCCGCGcgcuuacgcGCGCcGGaCUGACGgCCGACGAu -3'
miRNA:   3'- -GGCGUu--------CGCGuCC-GGCUGC-GGCUGUU- -5'
28134 5' -60 NC_005887.1 + 18368 0.67 0.338652
Target:  5'- uCCGCGuagacGGCGC--GCCGGCGCUcGCGAa -3'
miRNA:   3'- -GGCGU-----UCGCGucCGGCUGCGGcUGUU- -5'
28134 5' -60 NC_005887.1 + 2939 0.67 0.345196
Target:  5'- gCGCAAGCGCcgcGGCaccgccgCGAccauccuCGCCGGCGAc -3'
miRNA:   3'- gGCGUUCGCGu--CCG-------GCU-------GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 11329 0.67 0.346846
Target:  5'- gCCGCAAcCGCGacGGCCGguACGCUGAgCAc -3'
miRNA:   3'- -GGCGUUcGCGU--CCGGC--UGCGGCU-GUu -5'
28134 5' -60 NC_005887.1 + 5765 0.67 0.322688
Target:  5'- gCCGCGaaGGCGCuGGCCG-CGaaGugGGg -3'
miRNA:   3'- -GGCGU--UCGCGuCCGGCuGCggCugUU- -5'
28134 5' -60 NC_005887.1 + 42089 0.67 0.31492
Target:  5'- gUCGCGuggGGCGCGauGCCG-CGUCGACGAa -3'
miRNA:   3'- -GGCGU---UCGCGUc-CGGCuGCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.