miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 650 0.66 0.37227
Target:  5'- gCgGCGAGCGCAcGcGCaUGAcCGCCGACc- -3'
miRNA:   3'- -GgCGUUCGCGU-C-CG-GCU-GCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 34272 0.66 0.389911
Target:  5'- cUCGCGgcuuGCGCAuGCCGuCGCCGuGCGg -3'
miRNA:   3'- -GGCGUu---CGCGUcCGGCuGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 9895 0.66 0.408089
Target:  5'- uCCaGCcGGUGCAGGUCGGCgGCaCGAUc- -3'
miRNA:   3'- -GG-CGuUCGCGUCCGGCUG-CG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 21507 0.66 0.408089
Target:  5'- gCCgGCAaucGGCGCAa--CGACGCCGGCu- -3'
miRNA:   3'- -GG-CGU---UCGCGUccgGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 22772 0.66 0.363656
Target:  5'- aCGUGcuCGUuGGCuCGACGCCGGCGc -3'
miRNA:   3'- gGCGUucGCGuCCG-GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 39816 0.66 0.398934
Target:  5'- uUCGCAcugcuggauaaAGCGCgacGGGCCGcCGUCGcACAu -3'
miRNA:   3'- -GGCGU-----------UCGCG---UCCGGCuGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 4208 0.66 0.40258
Target:  5'- gCUGCAGcgcGCGCAGGagaaaggcgugcugcUCG-CGCCGACGc -3'
miRNA:   3'- -GGCGUU---CGCGUCC---------------GGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 17048 0.66 0.398934
Target:  5'- gCGCAgcGGCacGCuuGGGCgGACGCCGuCAu -3'
miRNA:   3'- gGCGU--UCG--CG--UCCGgCUGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 21814 0.66 0.398934
Target:  5'- uCCGC-GGCGCu-GCCGggcGCGCCGAa-- -3'
miRNA:   3'- -GGCGuUCGCGucCGGC---UGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 9477 0.66 0.398934
Target:  5'- aCGguGGCGaCGaacgacccGGCCGACcCCGGCAu -3'
miRNA:   3'- gGCguUCGC-GU--------CCGGCUGcGGCUGUu -5'
28134 5' -60 NC_005887.1 + 27771 0.66 0.384562
Target:  5'- gCGCcGGCG-AGGUagagcgccaugacgaCGGCGCCGACGc -3'
miRNA:   3'- gGCGuUCGCgUCCG---------------GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15400 0.66 0.37227
Target:  5'- aUCGC--GCGCGGGCagcgGAuCGUCGACGAc -3'
miRNA:   3'- -GGCGuuCGCGUCCGg---CU-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 10370 0.66 0.37227
Target:  5'- aCGUAcaacGGCGU--GCCGACGUCGACu- -3'
miRNA:   3'- gGCGU----UCGCGucCGGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 34098 0.66 0.389911
Target:  5'- uCCaGUGAGCGguGacGCCGAgCGCuCGGCAGa -3'
miRNA:   3'- -GG-CGUUCGCguC--CGGCU-GCG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 2408 0.66 0.389911
Target:  5'- gCCGCuggcuucgAGGCGaa-GCCcGCGCCGACGAa -3'
miRNA:   3'- -GGCG--------UUCGCgucCGGcUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 15262 0.66 0.37227
Target:  5'- gCCGCAGugcuGCGCGGcGagCGucCGCCGGCGAa -3'
miRNA:   3'- -GGCGUU----CGCGUC-Cg-GCu-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 16855 0.66 0.363656
Target:  5'- uCCGCGAGguguacCGCGGcGCgGACGgCuCGACAGg -3'
miRNA:   3'- -GGCGUUC------GCGUC-CGgCUGC-G-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 31129 0.66 0.406248
Target:  5'- -gGCGAGCuugccggGCAGGCCGugcgcauACGCCuGCAc -3'
miRNA:   3'- ggCGUUCG-------CGUCCGGC-------UGCGGcUGUu -5'
28134 5' -60 NC_005887.1 + 19180 0.66 0.37227
Target:  5'- uCCGUGagcGGCGCGGGCguggagacaggCGGCGCgguuaCGACGAg -3'
miRNA:   3'- -GGCGU---UCGCGUCCG-----------GCUGCG-----GCUGUU- -5'
28134 5' -60 NC_005887.1 + 8096 0.66 0.381022
Target:  5'- gCGCGcGCGCAGcucGCCGcgcuCGCCGAgGc -3'
miRNA:   3'- gGCGUuCGCGUC---CGGCu---GCGGCUgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.