miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 16450 0.71 0.18346
Target:  5'- aCCGCGugcGCGCGGGCauGCGCuCGACc- -3'
miRNA:   3'- -GGCGUu--CGCGUCCGgcUGCG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 17956 0.72 0.151789
Target:  5'- gUCGCAcauauGCGCGGGCU--CGCCGGCAu -3'
miRNA:   3'- -GGCGUu----CGCGUCCGGcuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 16503 0.72 0.155989
Target:  5'- uCgGCGAuGuCGCAGGCCGAucgcgucgcCGCCGGCGc -3'
miRNA:   3'- -GgCGUU-C-GCGUCCGGCU---------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 21628 0.72 0.164259
Target:  5'- gCCGguAGCGUuGGugaauacCCGACGCCGACc- -3'
miRNA:   3'- -GGCguUCGCGuCC-------GGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 12647 0.72 0.164705
Target:  5'- cCCGCAGGUuacgaGUGGGUCGGCgauuugccGCCGACGAa -3'
miRNA:   3'- -GGCGUUCG-----CGUCCGGCUG--------CGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 24947 0.72 0.164705
Target:  5'- aCGCGugcGCGCGGGCCGccuuGCGCgCGGCc- -3'
miRNA:   3'- gGCGUu--CGCGUCCGGC----UGCG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 26915 0.71 0.178601
Target:  5'- gCGCccGAGuCGCuGGCCGcCGUCGACGAa -3'
miRNA:   3'- gGCG--UUC-GCGuCCGGCuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13381 0.71 0.18346
Target:  5'- gCGCucGCGCugaAGGCCGGCG-CGGCGGa -3'
miRNA:   3'- gGCGuuCGCG---UCCGGCUGCgGCUGUU- -5'
28134 5' -60 NC_005887.1 + 14025 0.71 0.18346
Target:  5'- aCCGCcGGCGCGccGCCGGCGCagccugaGACGAu -3'
miRNA:   3'- -GGCGuUCGCGUc-CGGCUGCGg------CUGUU- -5'
28134 5' -60 NC_005887.1 + 14526 0.72 0.143695
Target:  5'- uUGCAGGCGC-GGCCGuCGgCGGCGc -3'
miRNA:   3'- gGCGUUCGCGuCCGGCuGCgGCUGUu -5'
28134 5' -60 NC_005887.1 + 29371 0.73 0.135624
Target:  5'- gCCGCGAGCgGCAugcccucGGCCcAUGCCGGCGc -3'
miRNA:   3'- -GGCGUUCG-CGU-------CCGGcUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 1463 0.73 0.132294
Target:  5'- gUGCGAGCaGgAGcCCGACGCCGACGg -3'
miRNA:   3'- gGCGUUCG-CgUCcGGCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 26320 0.83 0.022907
Target:  5'- cCUGCAGGUuCAGGCCGugGCCGGCGc -3'
miRNA:   3'- -GGCGUUCGcGUCCGGCugCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 32318 0.79 0.04357
Target:  5'- gCCGCAGuGCGUAGgaccacacGCCGAUGCCGGCGAa -3'
miRNA:   3'- -GGCGUU-CGCGUC--------CGGCUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 11387 0.77 0.067194
Target:  5'- gCGCAgccggAGCGCuggcGGCCGGCGCCGcCAAg -3'
miRNA:   3'- gGCGU-----UCGCGu---CCGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 9126 0.76 0.08444
Target:  5'- gUCGCAAGCGCaucgguauucAGGCCGuccgACGUCGGCAc -3'
miRNA:   3'- -GGCGUUCGCG----------UCCGGC----UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15921 0.75 0.097283
Target:  5'- cCUGCGuuccGCGCGGGCCGgaaucgauGCGCCGGCc- -3'
miRNA:   3'- -GGCGUu---CGCGUCCGGC--------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 36974 0.75 0.097283
Target:  5'- uCgGCGucGCGCGGGUCGAgcuCGCCGGCGAg -3'
miRNA:   3'- -GgCGUu-CGCGUCCGGCU---GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 4584 0.74 0.108865
Target:  5'- gCCGCcgAGGCGCAGGCCG-CGCaGAUg- -3'
miRNA:   3'- -GGCG--UUCGCGUCCGGCuGCGgCUGuu -5'
28134 5' -60 NC_005887.1 + 33820 0.74 0.108865
Target:  5'- aCGCGGGUGuCAGGUCGGCG-CGGCGAu -3'
miRNA:   3'- gGCGUUCGC-GUCCGGCUGCgGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.