Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28134 | 5' | -60 | NC_005887.1 | + | 14308 | 1.07 | 0.000294 |
Target: 5'- cCCGCAAGCGCAGGCCGACGCCGACAAg -3' miRNA: 3'- -GGCGUUCGCGUCCGGCUGCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 26320 | 0.83 | 0.022907 |
Target: 5'- cCUGCAGGUuCAGGCCGugGCCGGCGc -3' miRNA: 3'- -GGCGUUCGcGUCCGGCugCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 32318 | 0.79 | 0.04357 |
Target: 5'- gCCGCAGuGCGUAGgaccacacGCCGAUGCCGGCGAa -3' miRNA: 3'- -GGCGUU-CGCGUC--------CGGCUGCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 25069 | 0.77 | 0.065293 |
Target: 5'- gCCGCcGGCGCGaGCUGACGCuCGGCAAc -3' miRNA: 3'- -GGCGuUCGCGUcCGGCUGCG-GCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 11387 | 0.77 | 0.067194 |
Target: 5'- gCGCAgccggAGCGCuggcGGCCGGCGCCGcCAAg -3' miRNA: 3'- gGCGU-----UCGCGu---CCGGCUGCGGCuGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 9126 | 0.76 | 0.08444 |
Target: 5'- gUCGCAAGCGCaucgguauucAGGCCGuccgACGUCGGCAc -3' miRNA: 3'- -GGCGUUCGCG----------UCCGGC----UGCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 15921 | 0.75 | 0.097283 |
Target: 5'- cCUGCGuuccGCGCGGGCCGgaaucgauGCGCCGGCc- -3' miRNA: 3'- -GGCGUu---CGCGUCCGGC--------UGCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 36974 | 0.75 | 0.097283 |
Target: 5'- uCgGCGucGCGCGGGUCGAgcuCGCCGGCGAg -3' miRNA: 3'- -GgCGUu-CGCGUCCGGCU---GCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 18043 | 0.75 | 0.100064 |
Target: 5'- uCCaGUcGGUGC-GGCCGAUGCCGGCGAg -3' miRNA: 3'- -GG-CGuUCGCGuCCGGCUGCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 4584 | 0.74 | 0.108865 |
Target: 5'- gCCGCcgAGGCGCAGGCCG-CGCaGAUg- -3' miRNA: 3'- -GGCG--UUCGCGUCCGGCuGCGgCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 33820 | 0.74 | 0.108865 |
Target: 5'- aCGCGGGUGuCAGGUCGGCG-CGGCGAu -3' miRNA: 3'- gGCGUUCGC-GUCCGGCUGCgGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 2241 | 0.74 | 0.115131 |
Target: 5'- aCCGCGgccGGCGuCAGGCCGAaguccaUGCCGAUc- -3' miRNA: 3'- -GGCGU---UCGC-GUCCGGCU------GCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 41337 | 0.74 | 0.118388 |
Target: 5'- cCCGU--GCGCAGGUCGACggcgccauuGCCGACGc -3' miRNA: 3'- -GGCGuuCGCGUCCGGCUG---------CGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 27318 | 0.73 | 0.121731 |
Target: 5'- -gGCGA-CGCGGGCCGGCGCgCGAUg- -3' miRNA: 3'- ggCGUUcGCGUCCGGCUGCG-GCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 23579 | 0.73 | 0.125162 |
Target: 5'- cCCGCGcguucgucAGCGC-GGCCGAacaCGUCGGCAAg -3' miRNA: 3'- -GGCGU--------UCGCGuCCGGCU---GCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 1463 | 0.73 | 0.132294 |
Target: 5'- gUGCGAGCaGgAGcCCGACGCCGACGg -3' miRNA: 3'- gGCGUUCG-CgUCcGGCUGCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 18461 | 0.73 | 0.134505 |
Target: 5'- gCCGC-GGCGUAGGCCaucggguucgcgaGCGCCGGCGc -3' miRNA: 3'- -GGCGuUCGCGUCCGGc------------UGCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 29371 | 0.73 | 0.135624 |
Target: 5'- gCCGCGAGCgGCAugcccucGGCCcAUGCCGGCGc -3' miRNA: 3'- -GGCGUUCG-CGU-------CCGGcUGCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 34767 | 0.73 | 0.139798 |
Target: 5'- aCCGCAAGCGCGacgacGGCCGcccgcuGCuGCuCGACAAc -3' miRNA: 3'- -GGCGUUCGCGU-----CCGGC------UG-CG-GCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 6933 | 0.73 | 0.139798 |
Target: 5'- gCGCcuGCGCGuuGGCCGACGUCG-CGAg -3' miRNA: 3'- gGCGuuCGCGU--CCGGCUGCGGCuGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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