miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 613 0.7 0.21512
Target:  5'- uUCGCGcuguauccGGCGCGGcGCgCGGCGgCCGACGc -3'
miRNA:   3'- -GGCGU--------UCGCGUC-CG-GCUGC-GGCUGUu -5'
28134 5' -60 NC_005887.1 + 650 0.66 0.37227
Target:  5'- gCgGCGAGCGCAcGcGCaUGAcCGCCGACc- -3'
miRNA:   3'- -GgCGUUCGCGU-C-CG-GCU-GCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 1463 0.73 0.132294
Target:  5'- gUGCGAGCaGgAGcCCGACGCCGACGg -3'
miRNA:   3'- gGCGUUCG-CgUCcGGCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 1554 0.68 0.299809
Target:  5'- gCCGCGccGCGCgAGcGCCGcACGCCGuCGg -3'
miRNA:   3'- -GGCGUu-CGCG-UC-CGGC-UGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 1840 0.66 0.398934
Target:  5'- gCCGac-GCGCAGGUCGAgcaUGUCGAgGAu -3'
miRNA:   3'- -GGCguuCGCGUCCGGCU---GCGGCUgUU- -5'
28134 5' -60 NC_005887.1 + 2241 0.74 0.115131
Target:  5'- aCCGCGgccGGCGuCAGGCCGAaguccaUGCCGAUc- -3'
miRNA:   3'- -GGCGU---UCGC-GUCCGGCU------GCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 2358 0.7 0.21512
Target:  5'- aCCaGCGcuCGCAGGCCGACGacgaaGACAc -3'
miRNA:   3'- -GG-CGUucGCGUCCGGCUGCgg---CUGUu -5'
28134 5' -60 NC_005887.1 + 2408 0.66 0.389911
Target:  5'- gCCGCuggcuucgAGGCGaa-GCCcGCGCCGACGAa -3'
miRNA:   3'- -GGCG--------UUCGCgucCGGcUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 2414 0.71 0.173857
Target:  5'- cCUGCGAGCGCuGGUCGccCGCCGGa-- -3'
miRNA:   3'- -GGCGUUCGCGuCCGGCu-GCGGCUguu -5'
28134 5' -60 NC_005887.1 + 2562 0.66 0.389911
Target:  5'- gUGCAcGaGCAGGCCGGgcuCGCCGuCGAu -3'
miRNA:   3'- gGCGUuCgCGUCCGGCU---GCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 2867 0.69 0.251352
Target:  5'- gCCGCAGGCGguGGauaaCG-CGCaggCGACGAc -3'
miRNA:   3'- -GGCGUUCGCguCCg---GCuGCG---GCUGUU- -5'
28134 5' -60 NC_005887.1 + 2939 0.67 0.345196
Target:  5'- gCGCAAGCGCcgcGGCaccgccgCGAccauccuCGCCGGCGAc -3'
miRNA:   3'- gGCGUUCGCGu--CCG-------GCU-------GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 3075 0.67 0.330599
Target:  5'- cCUGCAGGCGCugaacGCCGACcacgGCCG-CAu -3'
miRNA:   3'- -GGCGUUCGCGuc---CGGCUG----CGGCuGUu -5'
28134 5' -60 NC_005887.1 + 3075 0.72 0.143695
Target:  5'- cCCGC-GGCGCuGGCCGcaggcGCGuuGACGGa -3'
miRNA:   3'- -GGCGuUCGCGuCCGGC-----UGCggCUGUU- -5'
28134 5' -60 NC_005887.1 + 3776 0.68 0.307294
Target:  5'- aUCGCGgucGGCGCGcGGCuCGACGgCGugGu -3'
miRNA:   3'- -GGCGU---UCGCGU-CCG-GCUGCgGCugUu -5'
28134 5' -60 NC_005887.1 + 4027 0.66 0.381022
Target:  5'- uUCGCGAGCaacgGCGGGUCGacgagcuucugcGCGCCG-CGGa -3'
miRNA:   3'- -GGCGUUCG----CGUCCGGC------------UGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 4208 0.66 0.40258
Target:  5'- gCUGCAGcgcGCGCAGGagaaaggcgugcugcUCG-CGCCGACGc -3'
miRNA:   3'- -GGCGUU---CGCGUCC---------------GGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 4584 0.74 0.108865
Target:  5'- gCCGCcgAGGCGCAGGCCG-CGCaGAUg- -3'
miRNA:   3'- -GGCG--UUCGCGUCCGGCuGCGgCUGuu -5'
28134 5' -60 NC_005887.1 + 4623 0.7 0.220832
Target:  5'- gCCGC-GGCGCcGGUgGcCGCCGGCGc -3'
miRNA:   3'- -GGCGuUCGCGuCCGgCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 4767 0.7 0.209536
Target:  5'- gCGaCGAGCGCGGgaaGCUGACGCCagccGGCGAg -3'
miRNA:   3'- gGC-GUUCGCGUC---CGGCUGCGG----CUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.