miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 8629 0.66 0.293547
Target:  5'- --uGCUGCGGUGCUGCcuuCGGCauGCGc -3'
miRNA:   3'- cguCGGCGUCACGACGc--GCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 10427 0.73 0.101733
Target:  5'- aCGGUCGCGGUGCUGacCGaCGGCGcAGUGc -3'
miRNA:   3'- cGUCGGCGUCACGAC--GC-GCCGC-UCGC- -5'
28135 5' -61.9 NC_005887.1 + 11388 0.75 0.072637
Target:  5'- cGCAGCCGgAGcGCUG-GCGGCcGGCGc -3'
miRNA:   3'- -CGUCGGCgUCaCGACgCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 11546 0.67 0.252735
Target:  5'- aGCAGCU-CGGcGCgcagcGCGCGGCGGucGCGg -3'
miRNA:   3'- -CGUCGGcGUCaCGa----CGCGCCGCU--CGC- -5'
28135 5' -61.9 NC_005887.1 + 11618 0.69 0.175589
Target:  5'- cGCGaccGCCGCGc-GCUGCGCGcCGAGCu -3'
miRNA:   3'- -CGU---CGGCGUcaCGACGCGCcGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 11792 0.71 0.134051
Target:  5'- uGCAuucguGCgCGCcGUGC-GCGCGGCGaAGCGa -3'
miRNA:   3'- -CGU-----CG-GCGuCACGaCGCGCCGC-UCGC- -5'
28135 5' -61.9 NC_005887.1 + 13611 0.67 0.246405
Target:  5'- --cGCUGCuG-GCaGCGCGGCGcGCGg -3'
miRNA:   3'- cguCGGCGuCaCGaCGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 13715 0.66 0.293547
Target:  5'- cGCGuucuGCaCGuCGGUGCUGCuCGGCuGAGUGc -3'
miRNA:   3'- -CGU----CG-GC-GUCACGACGcGCCG-CUCGC- -5'
28135 5' -61.9 NC_005887.1 + 14083 0.66 0.315809
Target:  5'- gGCGGCgCGCcGgcgGUUGCGgaGGCGcGCGg -3'
miRNA:   3'- -CGUCG-GCGuCa--CGACGCg-CCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 14704 0.7 0.162049
Target:  5'- cGCGGCgGgCGG-GCcggGCGCGGCGAucGCGc -3'
miRNA:   3'- -CGUCGgC-GUCaCGa--CGCGCCGCU--CGC- -5'
28135 5' -61.9 NC_005887.1 + 14821 0.71 0.14546
Target:  5'- gGCGGCCGCGacGCUGa-UGGCGGGCa -3'
miRNA:   3'- -CGUCGGCGUcaCGACgcGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 14949 0.67 0.246405
Target:  5'- aGCAGCuggCGCAuucUGCcGCGCGGUGcGCGc -3'
miRNA:   3'- -CGUCG---GCGUc--ACGaCGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15011 0.67 0.279397
Target:  5'- uGCGGCgCGUcGUacgGCagcGCGCGGCGuGCGu -3'
miRNA:   3'- -CGUCG-GCGuCA---CGa--CGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15048 0.73 0.090983
Target:  5'- uGCGGCCugcGCGGc-CUGCGCGGCGuaGGCGu -3'
miRNA:   3'- -CGUCGG---CGUCacGACGCGCCGC--UCGC- -5'
28135 5' -61.9 NC_005887.1 + 15258 1.09 0.000144
Target:  5'- gGCAGCCGCAGUGCUGCGCGGCGAGCGu -3'
miRNA:   3'- -CGUCGGCGUCACGACGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 15679 0.66 0.286403
Target:  5'- cCGGCCGCc-UGCUGCGCGacgccCGuGCGc -3'
miRNA:   3'- cGUCGGCGucACGACGCGCc----GCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15827 0.7 0.157748
Target:  5'- cGCAGgUGCAGcGCuUGCGCGGC--GCGa -3'
miRNA:   3'- -CGUCgGCGUCaCG-ACGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 15934 0.72 0.123472
Target:  5'- aGCuGCUGguGcgccUGCUGCGCG-CGGGCGu -3'
miRNA:   3'- -CGuCGGCguC----ACGACGCGCcGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 15974 0.7 0.149456
Target:  5'- cGCGGaaCGCAGgucggccaGCUGCGCGuCGAGCGc -3'
miRNA:   3'- -CGUCg-GCGUCa-------CGACGCGCcGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 16017 0.68 0.228201
Target:  5'- aCAGCgGC-GUGCggcGCGUGGCcGGCGc -3'
miRNA:   3'- cGUCGgCGuCACGa--CGCGCCGcUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.