miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 11792 0.71 0.134051
Target:  5'- uGCAuucguGCgCGCcGUGC-GCGCGGCGaAGCGa -3'
miRNA:   3'- -CGU-----CG-GCGuCACGaCGCGCCGC-UCGC- -5'
28135 5' -61.9 NC_005887.1 + 39082 0.71 0.14546
Target:  5'- aGCaAGCCGCcGUcGaCUGCGCGGUG-GCa -3'
miRNA:   3'- -CG-UCGGCGuCA-C-GACGCGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 5562 0.71 0.14546
Target:  5'- uGCGGCCGgugcugcggcCGGUGCUGCGCcaucGGCcuGCGu -3'
miRNA:   3'- -CGUCGGC----------GUCACGACGCG----CCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 14821 0.71 0.14546
Target:  5'- gGCGGCCGCGacGCUGa-UGGCGGGCa -3'
miRNA:   3'- -CGUCGGCGUcaCGACgcGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 15974 0.7 0.149456
Target:  5'- cGCGGaaCGCAGgucggccaGCUGCGCGuCGAGCGc -3'
miRNA:   3'- -CGUCg-GCGUCa-------CGACGCGCcGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 15827 0.7 0.157748
Target:  5'- cGCAGgUGCAGcGCuUGCGCGGC--GCGa -3'
miRNA:   3'- -CGUCgGCGUCaCG-ACGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 35393 0.7 0.157748
Target:  5'- cCGGCCGCcGcgGC-GCGCGGCagugGAGCGa -3'
miRNA:   3'- cGUCGGCGuCa-CGaCGCGCCG----CUCGC- -5'
28135 5' -61.9 NC_005887.1 + 29738 0.7 0.161614
Target:  5'- cGC-GCCGCGcGUGCacggucuUGCcCGGCGAGCu -3'
miRNA:   3'- -CGuCGGCGU-CACG-------ACGcGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 34703 0.7 0.162049
Target:  5'- gGCGGCCGUcGUcGCgcuugcggUGCGCGGCGAuGUa -3'
miRNA:   3'- -CGUCGGCGuCA-CG--------ACGCGCCGCU-CGc -5'
28135 5' -61.9 NC_005887.1 + 14704 0.7 0.162049
Target:  5'- cGCGGCgGgCGG-GCcggGCGCGGCGAucGCGc -3'
miRNA:   3'- -CGUCGgC-GUCaCGa--CGCGCCGCU--CGC- -5'
28135 5' -61.9 NC_005887.1 + 312 0.7 0.163798
Target:  5'- -aGGCCGCGGUGC-GCGCguacaccgaggaaguGcGCGAGCc -3'
miRNA:   3'- cgUCGGCGUCACGaCGCG---------------C-CGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 30763 0.7 0.166454
Target:  5'- uCAGCuCGaCcGUGC-GCGCGGCGAGUu -3'
miRNA:   3'- cGUCG-GC-GuCACGaCGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 2570 0.7 0.170967
Target:  5'- --cGCCGCAugGCcGUgaGCGGCGAGCGg -3'
miRNA:   3'- cguCGGCGUcaCGaCG--CGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 21055 0.7 0.170967
Target:  5'- aCAGCUGaauaGGUGCgaGCGUGGCGccaAGCGc -3'
miRNA:   3'- cGUCGGCg---UCACGa-CGCGCCGC---UCGC- -5'
28135 5' -61.9 NC_005887.1 + 11618 0.69 0.175589
Target:  5'- cGCGaccGCCGCGc-GCUGCGCGcCGAGCu -3'
miRNA:   3'- -CGU---CGGCGUcaCGACGCGCcGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 26495 0.69 0.180322
Target:  5'- cGCGGCUGCAGcGCgcguucccGCGCGGCcgccAGCu -3'
miRNA:   3'- -CGUCGGCGUCaCGa-------CGCGCCGc---UCGc -5'
28135 5' -61.9 NC_005887.1 + 24105 0.69 0.185167
Target:  5'- uGUGGCCcuugGCcGUGCUGCGCGuGuCGuGCGg -3'
miRNA:   3'- -CGUCGG----CGuCACGACGCGC-C-GCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 18999 0.69 0.185167
Target:  5'- gGCcGCCGaCGGccGCUGCGagauuCGGUGAGCGc -3'
miRNA:   3'- -CGuCGGC-GUCa-CGACGC-----GCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 3469 0.69 0.185167
Target:  5'- cGCccuGCCaGCGGUaGC-GCGCGGCGAacaGCGu -3'
miRNA:   3'- -CGu--CGG-CGUCA-CGaCGCGCCGCU---CGC- -5'
28135 5' -61.9 NC_005887.1 + 33148 0.69 0.195203
Target:  5'- aGCAGCCGaCcGUGC--CGCGGCGGuGCu -3'
miRNA:   3'- -CGUCGGC-GuCACGacGCGCCGCU-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.