miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 625 0.67 0.279397
Target:  5'- -uGGCCgGCGGUcuucGCgcuguauccgGCGCGGCGcGCGg -3'
miRNA:   3'- cgUCGG-CGUCA----CGa---------CGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 41962 0.67 0.279397
Target:  5'- ----gCGUGGUGCgUGCGCGGCGcGCu -3'
miRNA:   3'- cgucgGCGUCACG-ACGCGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 351 0.67 0.279397
Target:  5'- --cGUCGCA-UG-UGCGCGGUGAGCu -3'
miRNA:   3'- cguCGGCGUcACgACGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 24956 0.67 0.272528
Target:  5'- cGCgGGCCGCcuUGC-GCGCGGCc-GCGa -3'
miRNA:   3'- -CG-UCGGCGucACGaCGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 33642 0.67 0.265795
Target:  5'- cGUAGCgCGC---GCUGCGCucGGCGAGgGu -3'
miRNA:   3'- -CGUCG-GCGucaCGACGCG--CCGCUCgC- -5'
28135 5' -61.9 NC_005887.1 + 4660 0.67 0.265795
Target:  5'- uCAGCgacgCGCAGaccGCUGCGCagacGGCGAGgGu -3'
miRNA:   3'- cGUCG----GCGUCa--CGACGCG----CCGCUCgC- -5'
28135 5' -61.9 NC_005887.1 + 21578 0.67 0.259198
Target:  5'- gGCAGCCgGCGucGUUGCGCcgauugccggcGGCGAuGCGa -3'
miRNA:   3'- -CGUCGG-CGUcaCGACGCG-----------CCGCU-CGC- -5'
28135 5' -61.9 NC_005887.1 + 35545 0.67 0.259198
Target:  5'- aGC-GCCGaUGGUcuGCucgacaUGUGCGGCGAGCGc -3'
miRNA:   3'- -CGuCGGC-GUCA--CG------ACGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 11546 0.67 0.252735
Target:  5'- aGCAGCU-CGGcGCgcagcGCGCGGCGGucGCGg -3'
miRNA:   3'- -CGUCGGcGUCaCGa----CGCGCCGCU--CGC- -5'
28135 5' -61.9 NC_005887.1 + 2605 0.67 0.252735
Target:  5'- aGUAGCCGCccgacAGcGCcuUGCGCaGCGuGCGg -3'
miRNA:   3'- -CGUCGGCG-----UCaCG--ACGCGcCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 41597 0.67 0.246405
Target:  5'- aGCGGCgGCccaGGUGCggcggccgGCGCGGCccGUGa -3'
miRNA:   3'- -CGUCGgCG---UCACGa-------CGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 14949 0.67 0.246405
Target:  5'- aGCAGCuggCGCAuucUGCcGCGCGGUGcGCGc -3'
miRNA:   3'- -CGUCG---GCGUc--ACGaCGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 13611 0.67 0.246405
Target:  5'- --cGCUGCuG-GCaGCGCGGCGcGCGg -3'
miRNA:   3'- cguCGGCGuCaCGaCGCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 4684 0.68 0.228201
Target:  5'- gGCGGCCacCGGcGC--CGCGGCGAGCa -3'
miRNA:   3'- -CGUCGGc-GUCaCGacGCGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 16017 0.68 0.228201
Target:  5'- aCAGCgGC-GUGCggcGCGUGGCcGGCGc -3'
miRNA:   3'- cGUCGgCGuCACGa--CGCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 17191 0.68 0.222391
Target:  5'- cGCGGCCGCAcgcggcaaUGUUGCGCcGCGcaAGCa -3'
miRNA:   3'- -CGUCGGCGUc-------ACGACGCGcCGC--UCGc -5'
28135 5' -61.9 NC_005887.1 + 34348 0.68 0.222391
Target:  5'- uCAGCCGCAcGgcgacgGCaUGCGCaagccGCGAGCGc -3'
miRNA:   3'- cGUCGGCGU-Ca-----CG-ACGCGc----CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 16543 0.68 0.216707
Target:  5'- cCAGcCCGcCGGauccUGCcGCGCGGuCGAGCGc -3'
miRNA:   3'- cGUC-GGC-GUC----ACGaCGCGCC-GCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 40230 0.68 0.211148
Target:  5'- uGCcGUCGCGcaGCUcacaCGCGGCGAGCGc -3'
miRNA:   3'- -CGuCGGCGUcaCGAc---GCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 16207 0.68 0.204105
Target:  5'- gGCGcGCCGguGguuggcggggugguUGC-GCGCGGCGcAGCGc -3'
miRNA:   3'- -CGU-CGGCguC--------------ACGaCGCGCCGC-UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.